BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0003.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillu...   429   e-121
gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Her...   158   3e-40
gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase...    73   2e-14

>gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 254

 Score =  429 bits (1103), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/255 (96%), Positives = 246/255 (96%), Gaps = 1/255 (0%)

Query: 1   MGQFHRTTALAAALPLALVLLLAGCASTADSDGYYTVKRGDTLYSIGRDFDQSPANLRTW 60
           MGQFHRTTALAA   LALVLLLAGCASTADSDGYYTVKRGDTLYSIGRDFDQSPANLRTW
Sbjct: 1   MGQFHRTTALAALP-LALVLLLAGCASTADSDGYYTVKRGDTLYSIGRDFDQSPANLRTW 59

Query: 61  NRLRNPDDLEVGQRILVRPPVGVVARTGAGQSPRPAASSSPSASGSGSRKPASSPPAAKP 120
           NRLRNPDDLEVGQRILVRPPVGVVARTGAGQSPRPAASSSPSASGSGSRKPA S P AKP
Sbjct: 60  NRLRNPDDLEVGQRILVRPPVGVVARTGAGQSPRPAASSSPSASGSGSRKPAPSRPTAKP 119

Query: 121 AAKPQDDAGPGGAEAKVDWSWPTAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAG 180
           AAKPQDD  P GAEAKVDWSWPTAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAG
Sbjct: 120 AAKPQDDDAPAGAEAKVDWSWPTAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAG 179

Query: 181 HGIRGYGNMVIIKHTPQLLSVYAHNKTILVKEGQTVTRGQQIATMGNSDTNKVKLYFEIR 240
           HGIRGYGNMVIIKHTPQLLSVYAHNKTILVKEGQTVTRGQQIATMGNSDTNKVKLYFEIR
Sbjct: 180 HGIRGYGNMVIIKHTPQLLSVYAHNKTILVKEGQTVTRGQQIATMGNSDTNKVKLYFEIR 239

Query: 241 RNGKPINVMAVLPAR 255
           RNGKPINVMAVLPAR
Sbjct: 240 RNGKPINVMAVLPAR 254


>gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 332

 Score =  158 bits (400), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 91/119 (76%)

Query: 137 VDWSWPTAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTP 196
           V W WP  GK   + +  KKG+DI G  GQ+V+AA AGKV YAG GIRGYGN+VIIKHT 
Sbjct: 214 VSWMWPAEGKVVGTFEGGKKGVDIAGKAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKHTS 273

Query: 197 QLLSVYAHNKTILVKEGQTVTRGQQIATMGNSDTNKVKLYFEIRRNGKPINVMAVLPAR 255
            LLS YAHN+TILVKEGQ+VT+GQ+IA MG SD++ VKL+FEIR+ GKP++    LP R
Sbjct: 274 NLLSAYAHNQTILVKEGQSVTKGQKIAEMGKSDSDTVKLHFEIRQQGKPVDPSKYLPPR 332



 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 33  GYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPP 80
           GYYTVK+GDTLY I  +  Q+  ++  WN L NP+D++V Q + V PP
Sbjct: 56  GYYTVKKGDTLYRIALEAGQNWRDIVAWNNLTNPNDIKVDQTLRVAPP 103


>gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 156 KGIDIIGSEGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNKTILVKEGQT 215
           +G+ I   EG  V A AAG+V +A   +RG+GN++I+ H  Q +++Y +N+++L + G  
Sbjct: 371 RGLFIRAHEGAEVRAVAAGRVVFA-DWLRGFGNLIIVDHGNQYMTIYGNNQSVLKRAGDL 429

Query: 216 VTRGQQIATMGNSDTNKVK-LYFEIRRNGKPIN 247
           V  G  IAT GNS  N+   LYFE+R  G+  +
Sbjct: 430 VKAGDTIATAGNSGGNEQSGLYFEMRYQGRAFD 462


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 630,534
Number of extensions: 22599
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 5
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)