BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0233.p (570 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 1121 0.0 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 248 1e-66 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 215 7e-57 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 165 8e-42 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 1121 bits (2900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/570 (99%), Positives = 567/570 (99%) Query: 1 MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW 60 MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW Sbjct: 1 MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW 60 Query: 61 QQALRLLPPDSEEALALRYRLGRAFYEEERFEDAFLLYRELIESGWQLPELFVAAAAALQ 120 QQALRLLPPDSEEALALRYRLGRAFYEE RFEDAFLLYRELIESGWQLPELFVAAAAALQ Sbjct: 61 QQALRLLPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQ 120 Query: 121 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR 180 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR Sbjct: 121 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR 180 Query: 181 AQYWLAAGLVEHAQGQYEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRR 240 AQYWLAAGLVEHAQGQ+EEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRR Sbjct: 181 AQYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRR 240 Query: 241 ALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATIPAWNGGSSLAG 300 ALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATIPAWNGGSSLAG Sbjct: 241 ALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATIPAWNGGSSLAG 300 Query: 301 KRILLWAEQGQGDIIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEP 360 KRILLWAEQGQGD IQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEP Sbjct: 301 KRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEP 360 Query: 361 LPEVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLAALAPRSPARMRIGL 420 LPEVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLA LAPRSPARMRIGL Sbjct: 361 LPEVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGL 420 Query: 421 VCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAA 480 VCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAA Sbjct: 421 VCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAA 480 Query: 481 INDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTA 540 INDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTA Sbjct: 481 INDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTA 540 Query: 541 RLFRQQQPGAWDDVILTLRAALAVHGASPG 570 RLFRQQQPGAWDDVILTLRAALAVHGASPG Sbjct: 541 RLFRQQQPGAWDDVILTLRAALAVHGASPG 570 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 184/582 (31%), Positives = 286/582 (49%), Gaps = 53/582 (9%) Query: 19 YAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL------------ 66 +A+A+A L ++A P + + + L +Q R EA ++ A+R+ Sbjct: 74 FADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIRIDRDHRASRIGLA 133 Query: 67 --LPPDSEEALALRY----------------RLGRAFYEEERFEDAFLLYRELIESGWQL 108 L ++ ++ Y LGRA E +R+ +A + + +E Sbjct: 134 NALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKRYNEAVAVILKSLELQISF 193 Query: 109 PELFVAAAAALQGMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQ 168 A A M +A+ + A+ DP ++ A + + + D A + Sbjct: 194 APSHTALGEAFHAMEMYK----EAIESHKTAILLDPQDTYAHNKIADSYLKLNRIDEAHE 249 Query: 169 CIHQALRLDDQRAQYWLAAGLVEHAQG-QYEEALRYYDQALILAPELVDAHVSRGTTLAR 227 + + + + + ++ G + ++++A+R +++AL + + + + G Sbjct: 250 HLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIGAIQHD 309 Query: 228 LRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRS-ADPYR- 285 E+AI ++R+AL + A N+ALSLL+ G L++ W +E R R + YR Sbjct: 310 HGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRL 369 Query: 286 ----HATIPAWNGGSSLAGKRILLWAEQGQGDIIQFSRYVALILQAGAQVVLEVPASLLA 341 IP W+G SSLAGK ILL EQG GD IQF RYV ++L GA+V L V L Sbjct: 370 IHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYR 429 Query: 342 LMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLPLVCNT-RADDIPAAVP--YLCADPARR 398 L S + +TLV +PLP D LMSLP T DDIP+ VP YL ADP + Sbjct: 430 LFQSYS--PEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPS-VPGGYLSADPILK 486 Query: 399 ILWEERLAALAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQP 458 W E++ L+ +SP ++R+G+V GN + ND RSI + +FA L P ++F+ +Q Sbjct: 487 SSWGEKIRQLS-QSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATL-FQLPNIEFYSLQK 544 Query: 459 DLRQADRQWCEQQPGW--HWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVW 516 + + PG +G DFADTAA +A +DLV+SVDT+ HLAGA+ P W Sbjct: 545 G--KPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTW 602 Query: 517 IALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILTL 558 + LP+ PDWRWL + DSPWYP RLFRQ W+ V+ + Sbjct: 603 VLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKV 644 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 215 bits (548), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 191/605 (31%), Positives = 284/605 (46%), Gaps = 67/605 (11%) Query: 7 LKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL 66 L+ AL+ + A A+ L +L PR +A +L G + Q + A +A+ L Sbjct: 12 LQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAEAQLAKAIEL 71 Query: 67 LPPDSEEALALRYRLGRAFYEEERFEDAFLLYRELIESGWQLPELFVAAAAALQGMSPSG 126 P + L + A R ++A Y ++ E +A AAL+ + G Sbjct: 72 NP----DHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRL---G 124 Query: 127 KNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLA 186 +N +ALA LE A P AD W ++ + + + AR+ +A+ L + W Sbjct: 125 RNR-EALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFN 183 Query: 187 AGLVEHAQGQYEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDD 246 G Q ++ALR YD+AL + P+ +A +RG L ++++ EA+ +Y RAL +D+ Sbjct: 184 LGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDE 243 Query: 247 KDADAHLNLALSLLVLGRLEQA----------------------------------WPLY 272 + D N +L L R E+A W + Sbjct: 244 RAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGF 303 Query: 273 EWRWEGRSA-DPYRHATIPAWNGGSSLAGKRILLWAEQGQGDIIQFSRYVALILQAGAQV 331 E RW R P W G L GK ILL AEQG GD +QF RY L+ GA+V Sbjct: 304 ETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARV 363 Query: 332 VLEVPASLLALMHSLAVPTPLTLVAMGEPL-PEVDFQLPLMSLPLVCNTRAD-DIPAAVP 389 +LEV +L + L P ++ + P DF PLMSLPL C T ++ DIP A P Sbjct: 364 ILEVQPALTRQLAGL--PGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRA-P 420 Query: 390 YLCADPARRILWEERLAALAPRSPARMRIGLVCSGNAGNVN------DARRSIELSRFAP 443 YL + + W +RL PR+ A +R+GLV +G++ + D RS+ + AP Sbjct: 421 YLLPEASSWAAWHQRL----PRNRA-LRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAP 475 Query: 444 LA-LARPQ--LDFFVIQPDLRQADRQWCEQQPGWHWV---GAAINDFADTAAVLAGMDLV 497 L LAR L+F+ +Q + Q P V ++DFA+T A+LA +DL+ Sbjct: 476 LVELAREHAALEFYSLQ--VGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLL 533 Query: 498 ISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILT 557 I+VDT+ HLAGA+ PVW+ + WRW + DSPWY +F Q+ G WD+VI Sbjct: 534 ITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIAR 593 Query: 558 LRAAL 562 +RAAL Sbjct: 594 VRAAL 598 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 165 bits (418), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 177/373 (47%), Gaps = 40/373 (10%) Query: 218 HVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYE--WR 275 H L RL +HEEA++ Y A D A N+A L +GR+EQA +E R Sbjct: 146 HALHADILLRLNRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALR 205 Query: 276 W----------------------EGRSADPYRHATI-----------PAWNGGSSLAGKR 302 W EG A R P W G + GKR Sbjct: 206 WHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRGIDSPRPRWRAGEPVRGKR 265 Query: 303 ILLWAEQGQGDIIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLP 362 +LLWAEQGQGD +QF+RY+ L+ Q A+V L PASLLA++ + +P + GE P Sbjct: 266 VLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVL-APCLPQVRCMANPGE-AP 323 Query: 363 EVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLAALAPRSPARMRIGLVC 422 + D L+SLPL+ PYL A P R W+ L+AL P P R R+G+ Sbjct: 324 DHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAW 383 Query: 423 SGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAAIN 482 +G R I L APL DF +Q ++ D Q + Sbjct: 384 AGRQYATVHHSRDIPLDALAPLWTL--PADFVSLQVEVPAGD-QAAHATLAQRLHTPTLV 440 Query: 483 DFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARL 542 D+ADTAA+L +DLVISVDTA HLAGA+ P + L Y +WRW + + +PWYP+ +L Sbjct: 441 DWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQL 500 Query: 543 FRQQQPGAWDDVI 555 RQ++ G W V+ Sbjct: 501 LRQRERGQWGPVV 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,861,205 Number of extensions: 79579 Number of successful extensions: 375 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 347 Number of HSP's successfully gapped: 4 Length of query: 570 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 480 Effective length of database: 1,193,720 Effective search space: 572985600 Effective search space used: 572985600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)