BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0195.p (358 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 719 0.0 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 105 5e-24 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 102 4e-23 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 92 7e-20 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 86 6e-18 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/358 (99%), Positives = 357/358 (99%) Query: 1 MVTVKPDDAQPQYFAAPLPVGSFTVYSLDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLG 60 MVTVKPDDAQPQYFAAPLPVGSFTVYSLDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLG Sbjct: 1 MVTVKPDDAQPQYFAAPLPVGSFTVYSLDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLG 60 Query: 61 HIQIYRERSDKPLLKRGVNWPGSLVFSFVVQARGRGWLSGRAVDPQASLVADGEALPEII 120 HIQIYRERSDKPLLKRGVNWPGSLVFSFVVQARGRGWLSGRAVDPQASLVADGEALPEII Sbjct: 61 HIQIYRERSDKPLLKRGVNWPGSLVFSFVVQARGRGWLSGRAVDPQASLVADGEALPEII 120 Query: 121 TPAELDLVFIVVDRQWLSERIGDGASRQIAGSARDLRCFAAWHEHALVLRRLFPLLPGQA 180 TPAELDLVFIVVDRQWLSERIGDGASRQIAGSARDLRCFAAWHEHALVLRRLFPLLPGQA Sbjct: 121 TPAELDLVFIVVDRQWLSERIGDGASRQIAGSARDLRCFAAWHEHALVLRRLFPLLPGQA 180 Query: 181 RLGQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDVLGSVHRVEALRETDQKRLIDQAR 240 RLGQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDVLGSVHRVEALRETD KRLIDQAR Sbjct: 181 RLGQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDVLGSVHRVEALRETDHKRLIDQAR 240 Query: 241 RLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEARR 300 RLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEARR Sbjct: 241 RLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEARR 300 Query: 301 AGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTLRPYAPPAARRAAQRITSQNG 358 AGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTLRPYAPPAARRAAQRITSQNG Sbjct: 301 AGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTLRPYAPPAARRAAQRITSQNG 358 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 137/302 (45%), Gaps = 13/302 (4%) Query: 40 LDLLQMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRGVNWPGSLVFSFVVQARGRGWLS 99 L Q+S GK+ SL ++RER ++ ++++G + F+F V A G+ + Sbjct: 23 LHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPREQVCFAFPVAAPGKAHVQ 82 Query: 100 GRAVDPQASLVADGEALPEIITPAELDLVFIVVDRQWLSERIGDGAS--RQIAGSARDLR 157 GR VD L G P + DL I DR ++ AS R +A + + Sbjct: 83 GREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLEHTASPERIVALMKQPVV 142 Query: 158 CFAAWHEHALVLRRLFPLLPGQARLGQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDV 217 A+ HA RL + S GH SL +++ Sbjct: 143 KVASQDLHA-CRERLLNIF----YWAMLSIEDGHGQHPQHEQELELSLLAELLALLSAPD 197 Query: 218 LGSVHRVEALRETDQKRLIDQARRLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGI 277 G+ ++ +R ++D+ R DA ++ +V + VSRR +Q F T Sbjct: 198 CGASRQISTIR----SYIVDKLHRQTMNDAINVPSIFEVCEQMQVSRRTVQNSFQTVTET 253 Query: 278 PAIEFVRAERLNQVRKALVEARRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKT 337 ++R RLN VR+AL+ + +++IGDIA+ WGF+HLS FA DYR +F ELPS+T Sbjct: 254 TPRNYLRCVRLNGVRRALMST--SAEQITIGDIASRWGFFHLSHFAEDYRALFCELPSQT 311 Query: 338 LR 339 +R Sbjct: 312 IR 313 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 153/341 (44%), Gaps = 30/341 (8%) Query: 9 AQPQYFAAPLPVGSFTVYS--LDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYR 66 +QP A P+ T + +DE +L + Q++ G L Q +QI+R Sbjct: 7 SQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFR 66 Query: 67 ERSDKPLLKRGVNWPGSLVFSFVVQARGRGW-LSGRAVDPQASLVADGEALPEIITPAEL 125 E S + + + WP + + F ++AR G ++GR V + G E++TP Sbjct: 67 EASSRAVRQSCQVWPDA--YWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVTPDAH 124 Query: 126 DLVFIVVDRQWL---SERIGDGASRQIAGSARDLRCFAAWHEHALVLRRLFPLLPGQARL 182 ++ IVV R L + R+G Q G A L+ E + GQA Sbjct: 125 EIYGIVVQRDALQASAARLGCQPDWQRLGQAELLKVDHGGLEDCRQQIAALLAMAGQA-- 182 Query: 183 GQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDVL--GSVHRVEALRETDQKRLIDQAR 240 S H AL R A VL ALL +L G + ++R+++ AR Sbjct: 183 -----SGAHAALQLRQEA---------VLVALLAMLDEGEIEAEAGASFLRRRRIVNDAR 228 Query: 241 R--LMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLNQVRKALVEA 298 + D+P M A H VSRR LQ CF +G+ + ++R+ RLN VR+AL Sbjct: 229 EFAMAHQDSPVTVPMLCEAVH--VSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHG 286 Query: 299 RRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTLR 339 SIGDIAA WGF + S+F+ DY+ +FG+ PS L+ Sbjct: 287 DGRQAVGSIGDIAAAWGFANFSQFSCDYKKLFGQTPSAMLQ 327 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 141/340 (41%), Gaps = 40/340 (11%) Query: 18 LPVGSFTVYSLDEARLSLKAGQLDLLQMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRG 77 V + +DE L + + Q+ G+ + +L M Q RER++ L +R Sbjct: 6 FSVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERM 65 Query: 78 VNWPGSLVFSFVVQARGRGWLSGRAVDPQASLVADGEALPEIITPAELDLVFIVVDRQWL 137 V PG +V + L+GR + +V DG I T ++L+ I + R Sbjct: 66 VPPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLF 125 Query: 138 SERIGDGASRQIAGSAR---DLRCFAAWHEHALVLRRLFPLL-----PGQARLGQP---- 185 ++ + Q S R DL A +LR F L Q + P Sbjct: 126 LSQLHE----QDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISPR 181 Query: 186 ---SPSIGHCALAPRSSAGGGSLAEDMVLEALLDVLGSVHRVEALRETDQKRLIDQARRL 242 S I + ALA + G L L S R E R++ A Sbjct: 182 ALASTVISNVALALSLNHGSNDLES---------TLPSRQRRE--------RIVQNAIDY 224 Query: 243 MRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLN----QVRKALVEA 298 MR A E + V VSRR LQ CF + I +++++A RLN ++++ E Sbjct: 225 MRAHAGEEIGILDVCRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGED 284 Query: 299 RRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTL 338 R +IG++AA GF H SRFA++Y+ MFG LPS+T+ Sbjct: 285 RAHDRHATIGNLAALCGFNHPSRFASEYKKMFGVLPSETV 324 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 10/124 (8%) Query: 230 TDQKRLIDQARRLMRGDAPERATMTQVAAHLGVSRRHLQTCFNTSVGIPAIEFVRAERLN 289 T + ++++ R DA ++ +V L VSRR +Q F T + ++R RLN Sbjct: 213 TTRSYIVEKLHRQTIVDAANVPSIFEVCQRLQVSRRTVQNSFQTVAETTPLNYLRCVRLN 272 Query: 290 QVRKALVEARRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELPSKTLRPYAPPAARRA 349 VR+ L+ E SIGDIA+ WGF+HLS FA DY+ +FGELPS+T ARR Sbjct: 273 GVRRELLSTTHQ--EASIGDIASRWGFFHLSHFAEDYQALFGELPSQT--------ARRV 322 Query: 350 AQRI 353 Q+I Sbjct: 323 PQKI 326 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,150,574 Number of extensions: 50133 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 7 Length of query: 358 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 272 Effective length of database: 1,212,660 Effective search space: 329843520 Effective search space used: 329843520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)