BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0194.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway...   636   0.0  
gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003...    78   1e-15
gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway...    69   4e-13

>gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of
           phenol degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 316

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/316 (99%), Positives = 315/316 (99%)

Query: 1   MNDICCTGRRASAAACSALSVVCLGAFFSLPAQAVEQGATITPIGITDFGAGMLPPSSPY 60
           MNDICCTGRRASAAACSALSVVCLGAFFSLPAQAVEQGATITPIGITDFGAGMLPPSSP+
Sbjct: 1   MNDICCTGRRASAAACSALSVVCLGAFFSLPAQAVEQGATITPIGITDFGAGMLPPSSPF 60

Query: 61  GTVGVRASYYSASTLKDGAGKSIPNDFHIDVKTLALAYFYMTDVEVLGARFGVGGVLPFI 120
           GTVGVRASYYSASTLKDGAGKSIPNDFHIDVKTLALAYFYMTDVEVLGARFGVGGVLPFI
Sbjct: 61  GTVGVRASYYSASTLKDGAGKSIPNDFHIDVKTLALAYFYMTDVEVLGARFGVGGVLPFI 120

Query: 121 DISGGLKVGTPAGPLSVSGRDSGLGDMQVLPFILAWQLPPSVFVNAGLMIQAPTGAYSTS 180
           DISGGLKVGTPAGPLSVSGRDSGLGDMQVLPFILAWQLPPSVFVNAGLMIQAPTGAYSTS
Sbjct: 121 DISGGLKVGTPAGPLSVSGRDSGLGDMQVLPFILAWQLPPSVFVNAGLMIQAPTGAYSTS 180

Query: 181 KAFNAGVNHWTYSPFVGATYITSSGLELSTQVSLNVNTVNPATRYCSGVEYRQEFAIGQH 240
           KAFNAGVNHWTYSPFVGATYITSSGLELSTQVSLNVNTVNPATRY SGVEYRQEFAIGQH
Sbjct: 181 KAFNAGVNHWTYSPFVGATYITSSGLELSTQVSLNVNTVNPATRYRSGVEYRQEFAIGQH 240

Query: 241 IQSWTAGLAGYVYRQLSDDSGPGSGDGNRGRVYALGPAVSFAQPGLPLVTLHGYQEFGAR 300
           IQSWTAGLAGYVYRQLSDDSGPGSGDGNRGRVYALGPAVSFAQPGLPLVTLHGYQEFGAR
Sbjct: 241 IQSWTAGLAGYVYRQLSDDSGPGSGDGNRGRVYALGPAVSFAQPGLPLVTLHGYQEFGAR 300

Query: 301 NRAEGYNLALRLAMTF 316
           NRAEGYNLALRLAMTF
Sbjct: 301 NRAEGYNLALRLAMTF 316


>gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 13/275 (4%)

Query: 9   RRASAAACSALSVVCLGAFFSLPAQAVEQGATITPIGITDFGAGMLPPSSPYGTVGVRAS 68
           +R    AC   +   L       A A E G +    G T      LPP    G   V   
Sbjct: 2   KRGFVPACRLATCALLTMAAGPAAYAFEGGVSPFLTGSTSEYIAALPPIP--GLFAVEQF 59

Query: 69  YYSAST-LKDGAGKSIPNDFHIDVKTLALAYFYMTDVEVLGARFGVGGVLPFIDISGGLK 127
            YS+S  L D  G  +P  F     +          V+ LGA+     VLP + +   + 
Sbjct: 60  NYSSSNGLYDNNGNKLPIPFKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEV- 118

Query: 128 VGTPAGPLSVSGRDSGLGDMQVLPFILAWQLPPSVFVNAGLMIQAPTGAYSTSKAFNAGV 187
               AG    S   +GL ++   P +L W +     V  G  I   TG+YS ++  +  V
Sbjct: 119 ----AGH---SETHNGLSNVTATPVLLRWDVAAHTNVTFGFDISLETGSYSPTRP-SVAV 170

Query: 188 NHWTYSPFVGATYITSSGLELSTQVSLNVNTVNPATRYCSGVEYRQEFAIGQHIQSWTAG 247
            + ++ P +   +    GL+L     L +N  N +T Y SG  Y  +F  G ++  W  G
Sbjct: 171 GYTSWQPVLAVRHNNPDGLDLGISNRLLINDRNSSTNYRSGTAYVADFIGGWNVGKWKFG 230

Query: 248 LAGYVYRQLSDDSGPGSG-DGNRGRVYALGPAVSF 281
           + G    Q +DD   G+   GNR R  +LGP V++
Sbjct: 231 VTGSYLNQFTDDRQNGADITGNRARSLSLGPTVAY 265


>gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of
           phenol degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 316

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 168 LMIQAPTGAYSTSKAFNAGVNHWTYSPFVGATYITSSGLELSTQVSLNVNTVN--PATRY 225
           L    PTGAY  +   N G N W + P+   T   S  L  S ++    N  N  P+  +
Sbjct: 157 LQFILPTGAYDRNATVNPGSNTWAFDPYWAGTLWASQNLSFSWRLHYLWNARNNAPSAAF 216

Query: 226 CSGVEYRQ-------EFAIGQHIQ-SWTAGLAGYVYRQLSDDSGPGSG-DGNRGRVYALG 276
            + V   Q        FA    +  +WT G AGY  +Q++D    G+   G R RV  LG
Sbjct: 217 GNNVSSTQAGQAAHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVNGADVSGRRERVVGLG 276

Query: 277 PAVSFAQPGLPLVTLHGYQEFGARNRAEGYNLALRLAMTF 316
           PA         L+  + YQEF  RNRAE     +R    F
Sbjct: 277 PAAMMRLSERDLLFFNVYQEFAVRNRAENSKFQIRYDHHF 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,014,600
Number of extensions: 45203
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)