BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0193.p
         (407 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312310|ref|YP_003776402.1| major facilitator superfamily p...   645   0.0  

>gi|300312310|ref|YP_003776402.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/333 (99%), Positives = 332/333 (99%)

Query: 75  MLADRFGRKSMLLLGCLLYALFGALPVLLHEIRLILLSRLLFGCAEALIMTCCTTLIADY 134
           MLADRFGRKSMLLLGCLLYALFGALPVLLHE+RLILLSRLLFGCAEALIMTCCTTLIADY
Sbjct: 1   MLADRFGRKSMLLLGCLLYALFGALPVLLHELRLILLSRLLFGCAEALIMTCCTTLIADY 60

Query: 135 WPPRERMRYINRQVITIGVVGALFFVIGGVAGEGSWRTPFLLYLTPLLMLPAIVAWLWEP 194
           WPPRERMRYINRQVITIGVVGALFFVIGGVAGEGSWRTPFLLYLTPLLMLPAI AWLWEP
Sbjct: 61  WPPRERMRYINRQVITIGVVGALFFVIGGVAGEGSWRTPFLLYLTPLLMLPAIAAWLWEP 120

Query: 195 DRRQEDSHAAPALNGGVRRTVLTACFLIFAGMVTCFVVTVMTPTVLVMRGVTSTSLIGAA 254
           DRRQEDSHAAPALNGGVRRTVLTACFLIFAGMVTCFVVTVMTPTVLVMRGVTSTSLIGAA
Sbjct: 121 DRRQEDSHAAPALNGGVRRTVLTACFLIFAGMVTCFVVTVMTPTVLVMRGVTSTSLIGAA 180

Query: 255 AGLAILCTLIGSIAWPFVRERIGVAGVNALLLGCMAAGLCVLALAPSYAVVLAAMVLQGL 314
           AGLAILCTLIGSIAWPFVRERIGVAGVNALLLGCMAAGLCVLALAPSYAVVLAAMVLQG+
Sbjct: 181 AGLAILCTLIGSIAWPFVRERIGVAGVNALLLGCMAAGLCVLALAPSYAVVLAAMVLQGV 240

Query: 315 GAGFLVSNASLPLLLGLPPHLRARGVGAFTACLYLGQFASPLIITAIAQPLGGMPAGLAN 374
           GAGFLVSNASLPLLLGLPPHLRARGVGAFTACLYLGQFASPLIITAIAQPLGGMPAGLAN
Sbjct: 241 GAGFLVSNASLPLLLGLPPHLRARGVGAFTACLYLGQFASPLIITAIAQPLGGMPAGLAN 300

Query: 375 AILVWALLTMVLALVWLVVGLRHARLQSGPVAH 407
           AILVWALLTMVLALVWLVVGLRHARLQSGPVAH
Sbjct: 301 AILVWALLTMVLALVWLVVGLRHARLQSGPVAH 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,071
Number of extensions: 37912
Number of successful extensions: 367
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 4
Length of query: 407
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,207,925
Effective search space: 386536000
Effective search space used: 386536000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)