BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0188.p (297 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312305|ref|YP_003776397.1| LysR family transcription regul... 598 e-172 gi|300312111|ref|YP_003776203.1| LysR family transcription regul... 238 3e-64 gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 96 5e-21 gi|300313689|ref|YP_003777781.1| LysR family transcription regul... 91 1e-19 gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 89 4e-19 >gi|300312305|ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 598 bits (1543), Expect = e-172, Method: Compositional matrix adjust. Identities = 297/297 (100%), Positives = 297/297 (100%) Query: 1 MSNRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQ 60 MSNRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQ Sbjct: 1 MSNRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQ 60 Query: 61 TTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAR 120 TTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAR Sbjct: 61 TTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAR 120 Query: 121 HPHTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLA 180 HPHTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLA Sbjct: 121 HPHTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLA 180 Query: 181 RRKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG 240 RRKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG Sbjct: 181 RRKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG 240 Query: 241 VAVLPETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQALQAHP 297 VAVLPETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQALQAHP Sbjct: 241 VAVLPETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQALQAHP 297 >gi|300312111|ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 238 bits (608), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 117/290 (40%), Positives = 181/290 (62%) Query: 5 FELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTTDA 64 F+L+DLRLF+ I E S+T A+R +++L + S RI+ +E GT LL R +GVQ T A Sbjct: 3 FDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLTPA 62 Query: 65 GRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHPHT 124 G L HHA+ QQ+E L+ ++ QY G+KG+IR+ NT+A+TEF+PE+L +FLARHP Sbjct: 63 GHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 Query: 125 DIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLARRKS 184 ++ LEE+L++++++ + +G AD+GI+A LQ F D LV + HPLA S Sbjct: 123 NVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADAPS 182 Query: 185 LAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGVAVL 244 L F + L + +GL S L LS G+RL+ R+++RSF+ +CRM+E VG+ +L Sbjct: 183 LPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIGIL 242 Query: 245 PETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQALQ 294 P +AA M + + LSD WS R+ + V+ ++ L R L++ ++ Sbjct: 243 PRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIR 292 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 2/265 (0%) Query: 10 LRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTTDAGRALA 69 L+ FL + + AQR H++ ++ SA I+ +E A G L ER R V T G Sbjct: 10 LQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPEGELFV 69 Query: 70 HHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHPHTDIELE 129 AR + +E ++ Y KG + + S +LP VLA + R+P +EL Sbjct: 70 QVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 Query: 130 EKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLARRKSLAFAE 189 + +S + + + G D+ + A + T P D V K H LA ++ + + Sbjct: 130 DAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRRIKVPQ 189 Query: 190 LLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGVAVLPETAA 249 L G + + L+ ++++QHL R G + + + + ++E +GV+V+PE Sbjct: 190 LAGCEMIHLARSTSVRQHLDA-VLRPGGVIHTGLEVEHLATVAALIESGLGVSVVPEL-T 247 Query: 250 LASTPHMDIRAIPLSDGWSRRQLLI 274 L ++ AIPL +R LLI Sbjct: 248 LFQFRLPNLVAIPLDAPELKRPLLI 272 >gi|300313689|ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 8 SDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTTDAGRA 67 + LR F + +GS+T A+R +A+++ S +I ME+ G PL ER RG+ T AG Sbjct: 4 TSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPAGEV 63 Query: 68 LAHHARMMAQQMEQLRDEL-GQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHPHTDI 126 L +AR +MEQ+ E+ G +A G +G I L C+ + LP V A+F ++P Sbjct: 64 LMAYARRNLLEMEQVLAEVRGLHAVG-QGVITLACSEGFAWDLLPNVTAQFREQYPGLQF 122 Query: 127 ELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKR-HPLARRKSL 185 +L + Q VIDG AD+ + + L +R+ V L KR HPLA R L Sbjct: 123 KLHVVGAARASQMVIDGEADISVTYSLAPAEGLAV-AYRESGPVFALMKRDHPLASRTLL 181 Query: 186 AFAEL 190 A ++L Sbjct: 182 ALSDL 186 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 2/279 (0%) Query: 1 MSNRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQ 60 M E ++L+ F+ + S A+ + + S RI N+E AL L +R R V Sbjct: 1 MRINIETAELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVS 60 Query: 61 TTDAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAR 120 T AG HA+ + +++E + Q + H+ + C S LP+VL R+ Sbjct: 61 LTPAGELFLVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARS 120 Query: 121 HPHTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLA 180 H + + + ++ + +V+++V G AD G+ + ++ +AV+ HPLA Sbjct: 121 HANVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLA 180 Query: 181 RRKSLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG 240 SL + L GE V +S S + + +R +R + G +V +G Sbjct: 181 AHASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 Query: 241 VAVLPETAALASTPHMDIRAIPL-SDGWSRRQLLICVRG 278 VA+LPE A+ + P+ I A P+ S SR LI ++G Sbjct: 241 VALLPEL-AIRNAPYKGIVARPVTSPVLSRAMGLITLKG 278 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 946,580 Number of extensions: 40139 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 59 Length of query: 297 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 212 Effective length of database: 1,217,395 Effective search space: 258087740 Effective search space used: 258087740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)