BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0171.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas...   215   7e-58
gi|300309955|ref|YP_003774047.1| two-component system sensor his...   102   4e-24
gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas...    90   3e-20
gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p...    90   4e-20
gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C...    88   2e-19

>gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  215 bits (547), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR 60
           MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR
Sbjct: 17  MVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYAR 76

Query: 61  VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 105
           VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG
Sbjct: 77  VPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 121


>gi|300309955|ref|YP_003774047.1| two-component system sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  102 bits (255), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 68/100 (68%)

Query: 5   SLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYARVPIL 64
           +LK+AGY+V EA DG  AL     + F+LV++D NMP +DGL+ +R ++++ +Y   P++
Sbjct: 21  ALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGLSFVREMKQMPAYKFTPVI 80

Query: 65  MLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 104
           MLTTE S+  K +GKAAG   W+ KPF P  L + V K+I
Sbjct: 81  MLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120


>gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score = 90.1 bits (222), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 6   LKAAGY-NVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELTSYARVPIL 64
           LK  GY NV EA DGV AL+K +S  FD V++D NMP MDGLT+++ +R+  + +++P+L
Sbjct: 25  LKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLTMLQEIRKDPALSKLPVL 84

Query: 65  MLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 104
           M+T E   E       AGANG++VKPF    L E + K+ 
Sbjct: 85  MVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124


>gi|300311034|ref|YP_003775126.1| chemotaxis response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 126

 Score = 89.7 bits (221), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 5   SLKAAGYNVTEAVDGVDALEKAKS-QTFDLVLTDQNMPRMDGLTLIRSLRELTSYARVPI 63
            L+ AG+ V  A DGV AL+K ++    DL++TD NMP MDGL LIR++R L  +  +PI
Sbjct: 23  HLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGLELIRNVRALPGFRFIPI 82

Query: 64  LMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 104
           L LTTE     + +GK AGA GWLVKP     L ++VR+V+
Sbjct: 83  LTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123


>gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 87.8 bits (216), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 6   LKAAGYNVTEAVDGVDALEKAKSQ-TFDLVLTDQNMPRMDGLTLIRSLRELTSYARVPIL 64
           LK  G +V  AVDG D L K K      LV++D NMP MDGLT+   +R     A V I+
Sbjct: 21  LKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLTMAEKIRSELGNASVNII 80

Query: 65  MLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 105
           MLTTE S  MK +GKAAG  GW+VKPF  + +    +K++G
Sbjct: 81  MLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLVG 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 241,438
Number of extensions: 6849
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 28
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 28
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)