BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0155.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312272|ref|YP_003776364.1| dihydrolipoamide succinyltransf...   827   0.0  
gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransfer...   171   1e-43

>gi|300312272|ref|YP_003776364.1| dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex protein [Herbaspirillum
           seropedicae SmR1]
          Length = 413

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/413 (100%), Positives = 413/413 (100%)

Query: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEPVSRDENLIDIETDKVVLELPSPDAGVITQI 60
           MAQIEVKVPQLSESVAEATLLQWHKKVGEPVSRDENLIDIETDKVVLELPSPDAGVITQI
Sbjct: 1   MAQIEVKVPQLSESVAEATLLQWHKKVGEPVSRDENLIDIETDKVVLELPSPDAGVITQI 60

Query: 61  IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQATNEPTPVAAPELASKGDVAMPA 120
           IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQATNEPTPVAAPELASKGDVAMPA
Sbjct: 61  IKADGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQATNEPTPVAAPELASKGDVAMPA 120

Query: 121 AAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVKAGLE 180
           AAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVKAGLE
Sbjct: 121 AAKLLADNNLSTSQVTGTGKDGRVTKGDVLGALSAPAAAPAAAAKPALAQVAAPVKAGLE 180

Query: 181 SRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGVKL 240
           SRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGVKL
Sbjct: 181 SRPEQRVPMSRLRARVAERLVQSQSTNAILTTFNEINMQPVIDLRNKYKDKFEKEHGVKL 240

Query: 241 GFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQMSI 300
           GFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQMSI
Sbjct: 241 GFMSFFVKAVVHALKKYPIVNASVDGNDIVYHGYFDIGVAVGSPRGLVVPILRDADQMSI 300

Query: 301 ADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHATK 360
           ADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHATK
Sbjct: 301 ADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNGGTFGSMLSTPIINPPQSAILGIHATK 360

Query: 361 ERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 413
           ERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL
Sbjct: 361 ERAVVENGQVVVRPINYFALSYDHRIIDGREAVLSLVAIKEALEDPARLLLDL 413


>gi|300310786|ref|YP_003774878.1| dihydrolipoamide acetyltransferase
           component of pyruvate dehydrogenase complex
           [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 209/415 (50%), Gaps = 31/415 (7%)

Query: 4   IEVKVPQLSESVAEATLLQWHKKVGEPVSRDENLIDIETDKVVLELPSPDAGVITQIIKA 63
           +E++VP + +   E  +++   KVG+ V  +++L+ +E+DK  +E+PS  AGVI ++   
Sbjct: 120 VEIEVPDIGD-FKEVEVIEVMVKVGDTVKAEQSLLTVESDKASMEIPSSHAGVIKELKVK 178

Query: 64  DGATVVAGEVIAILDTDASAQVAPTEVKAAPAPQATNEPTPV-----------------A 106
            G  V  G +IA ++    A  A      A AP A   P P                  +
Sbjct: 179 LGDKVSKGSIIATIEAAGGAPAAAPAAAPAAAPAAAAAPAPASAPAPAAAAAVPAIATAS 238

Query: 107 APELASKGDVAMPAAAKLLADNNLSTSQVTGTGKDGRV--------TKGDVLGALSAPAA 158
           A     K   A P+  K   +  +  S+V  TG  GR+         KG + G+ S  A+
Sbjct: 239 ATSTGGKAH-ASPSVRKFARELGVDLSRVPATGPKGRILQLDVQNFVKGVMAGSTSVAAS 297

Query: 159 APAAAAKPALAQVAAPVKAGLESRPEQRV-PMSRLRARVAERLVQSQSTNAILTTFNEIN 217
           APA     A   +            E  + P+SR++      L ++      +T F+E +
Sbjct: 298 APATNGSGAGMNLLPWPSLDFSKFGETELQPLSRIKKISGPNLHRNWVMIPHVTQFDEAD 357

Query: 218 MQPVIDLRNKYKDKFEKEHG-VKLGFMSFFVKAVVHALKKYPIVNASVD--GNDIVYHGY 274
           +  + + R    D F K    VKL  ++F +KA V ALKK+P  N+S+D  G +++   +
Sbjct: 358 VTELEEFRKTSNDAFAKAKSPVKLTMLAFVIKASVSALKKFPAFNSSLDAKGENLILKKF 417

Query: 275 FDIGVAVGSPRGLVVPILRDADQMSIADIEKKIGEFGQKAKDGKLSIEELSGGTFTVSNG 334
           ++IG A  +P GLVVP++++ADQ SI  I  ++GE   +A+DGKL   ++ G TFT+S+ 
Sbjct: 418 YNIGFAADTPNGLVVPVIKNADQKSIGQIAIEMGELSAQARDGKLKPADMQGATFTISSL 477

Query: 335 GTFGSMLSTPIINPPQSAILGIHATKERAVVENGQVVVRPINYFALSYDHRIIDG 389
           G  G    TPIIN P+ AILG+  +  + V +  Q V R +   +LSYDHR+IDG
Sbjct: 478 GGIGGTAFTPIINAPEVAILGLSKSITKPVWDGKQFVPRLMLPTSLSYDHRVIDG 532


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,217,282
Number of extensions: 50736
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 4
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)