BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0153.p
         (380 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312270|ref|YP_003776362.1| ATPase [Herbaspirillum seropedi...   750   0.0  

>gi|300312270|ref|YP_003776362.1| ATPase [Herbaspirillum seropedicae
           SmR1]
          Length = 365

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/365 (99%), Positives = 364/365 (99%)

Query: 16  MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV 75
           MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV
Sbjct: 1   MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV 60

Query: 76  YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA 135
           YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA
Sbjct: 61  YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA 120

Query: 136 KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT 195
           KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT
Sbjct: 121 KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT 180

Query: 196 IALLKEKLDVMNIDAGIDYRKRVLEQVKVYHTPLNAKTDEELRAAFAAVAEATEEDPRVH 255
           IALLKEKLDVMNIDAGIDYRKRVLEQVKVYHTPLNAKTDEELRAAFAAVAEATEEDPRVH
Sbjct: 181 IALLKEKLDVMNIDAGIDYRKRVLEQVKVYHTPLNAKTDEELRAAFAAVAEATEEDPRVH 240

Query: 256 IEAREIRALRRAGSAIWFDFATLCGGPRSQNDYLELASRFQTVILSGIPRMSAAMSSEAR 315
           IEAREIRALRRAGSAIWFDFATLCGGPRSQNDYLELASRFQTVILSGIPRMSAAMSSEAR
Sbjct: 241 IEAREIRALRRAGSAIWFDFATLCGGPRSQNDYLELASRFQTVILSGIPRMSAAMSSEAR 300

Query: 316 RFTWLIDVFYDHKVKLIMSAAVEPDELYAVGTLSNEFHRTVSRIIEMQSKEYLDADRRSI 375
           RFTWLIDVFYDHKVKLIMSAAVEPDELY VGTLSNEFHRTVSRIIEMQSKEYLDADRRSI
Sbjct: 301 RFTWLIDVFYDHKVKLIMSAAVEPDELYTVGTLSNEFHRTVSRIIEMQSKEYLDADRRSI 360

Query: 376 ADSLS 380
           ADSLS
Sbjct: 361 ADSLS 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,046,516
Number of extensions: 39171
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,207,925
Effective search space: 353922025
Effective search space used: 353922025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)