BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0149.p
         (728 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase [Her...  1485   0.0  

>gi|300312268|ref|YP_003776360.1| ATP-dependent DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 747

 Score = 1485 bits (3845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/728 (99%), Positives = 725/728 (99%)

Query: 1   VTAPEAPAEIPDRSASDLTPATPEDAAAVAAPGVHDAEIDRLFGAGGPLGGAVGSYRPRR 60
           VTAPEAPAEIPDRSASDLTPATPEDAAAVAAPGVHDAEIDRLFGAGGPLGGAVGSYRPR 
Sbjct: 20  VTAPEAPAEIPDRSASDLTPATPEDAAAVAAPGVHDAEIDRLFGAGGPLGGAVGSYRPRH 79

Query: 61  AQTEMAKAIATAIAGQGTLIAEAGTGTGKTFAYLVPALLWGGKTIVSTGTKTLQDQLFNR 120
           AQTEMAKAIATAIAGQGTLIAEAGTGTGKTFAYLVPALLWGGKTIVSTGTKTLQDQLFNR
Sbjct: 80  AQTEMAKAIATAIAGQGTLIAEAGTGTGKTFAYLVPALLWGGKTIVSTGTKTLQDQLFNR 139

Query: 121 DIPTVRKALHAPFSVALLKGRSNYVCHFHLERTLQNGRLTAREDVGYLREISRFVKSTSS 180
           DIPTVRKALHAP SVALLKGRSNYVCHFHLERTLQNGRLTAREDVGYLREISRFVKSTSS
Sbjct: 140 DIPTVRKALHAPVSVALLKGRSNYVCHFHLERTLQNGRLTAREDVGYLREISRFVKSTSS 199

Query: 181 GDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVVNHHLFF 240
           GDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVVNHHLFF
Sbjct: 200 GDKAELTKVPETASVWNLVTSTRDTCFGAECQYYQDCFVMKARKEAQQADVVVVNHHLFF 259

Query: 241 ADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVLAEGLSHA 300
           ADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVLAEGLSHA
Sbjct: 260 ADVALKDTGIAELLPSANTVIFDEAHQLPDTATLFFGETISTSQILELCRDVLAEGLSHA 319

Query: 301 RDGADWARLVAPVERAARDLRLAFSEDSVRLALNQIAPSSTFFPALDTLKDCMDDMIAVL 360
           RDGADWARLVAPVERAARDLRLAFSEDSVRLALNQIAPSSTFFPALDTLKDCMDDMI VL
Sbjct: 320 RDGADWARLVAPVERAARDLRLAFSEDSVRLALNQIAPSSTFFPALDTLKDCMDDMITVL 379

Query: 361 EKQAERAETIEQCRDRANELLRQLENWGTPEELEKIQAEAAAKAAAKPAEAKRAESGDEQ 420
           EKQAERAETIEQCRDRANELLRQLENWGTPEELEKIQAEAAAKAAAKPAEAKRAESGDEQ
Sbjct: 380 EKQAERAETIEQCRDRANELLRQLENWGTPEELEKIQAEAAAKAAAKPAEAKRAESGDEQ 439

Query: 421 QEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLAVKKDFNH 480
           QEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLAVKKDFNH
Sbjct: 440 QEPSGQKPFYVLWVEAFQSSLQLHRTPLSIAPIFNKQREGTPRSWIFTSATLAVKKDFNH 499

Query: 481 YAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQPNSFEYTDAVIDAALPIIEAAGGRC 540
           YAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQPNSFEYTDAVIDAALPIIEAAGGRC
Sbjct: 500 YAAQMGLWNAPAQSWPSPFNYGEQGILYVPQNLPQPNSFEYTDAVIDAALPIIEAAGGRC 559

Query: 541 FFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEAGRTELLDRFRAAGNGVLIGSQSFW 600
           FFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEAGRTELLDRFRAAGNGVLIGSQSFW
Sbjct: 560 FFLCTTLRAVNRAAERLRAEFEARGHAFPLFVQGEAGRTELLDRFRAAGNGVLIGSQSFW 619

Query: 601 EGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAIINLKQGAG 660
           EGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAIINLKQGAG
Sbjct: 620 EGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQGLNGFVHHQLPAAIINLKQGAG 679

Query: 661 RLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTREQEVVQAFFREQDARRAAAAG 720
           RLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTREQEVVQAFFREQDARRAAAAG
Sbjct: 680 RLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTREQEVVQAFFREQDARRAAAAG 739

Query: 721 EGAGPEQH 728
           EGAGPEQH
Sbjct: 740 EGAGPEQH 747


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,028,624
Number of extensions: 82633
Number of successful extensions: 285
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 636
Effective length of database: 1,184,250
Effective search space: 753183000
Effective search space used: 753183000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)