BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0139.p
         (368 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme prote...   762   0.0  

>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/368 (99%), Positives = 367/368 (99%)

Query: 1   LGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAEVRAPAIISDHTSTDGTRK 60
           LGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAEVRAPAIISDHTSTDGTRK
Sbjct: 23  LGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAEVRAPAIISDHTSTDGTRK 82

Query: 61  WLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNLSVAEIIGQLW 120
           WLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNLSVAEIIGQLW
Sbjct: 83  WLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNLSVAEIIGQLW 142

Query: 121 MAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNAYGLSRRRV 180
           MAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNAYGLSRRRV
Sbjct: 143 MAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNAYGLSRRRV 202

Query: 181 TLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLACKRYLEFA 240
           TLSTSGVVPMI KLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLACKRYLEFA
Sbjct: 203 TLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLACKRYLEFA 262

Query: 241 PRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPESGLKRSHNPR 300
           PRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPESGLKRSHNPR
Sbjct: 263 PRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPESGLKRSHNPR 322

Query: 301 IKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKMAEYQNKFGKDF 360
           IKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKMAEYQNKFGKDF
Sbjct: 323 IKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKMAEYQNKFGKDF 382

Query: 361 GRIVEISG 368
           GRIVEISG
Sbjct: 383 GRIVEISG 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,011
Number of extensions: 46451
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,207,925
Effective search space: 339426925
Effective search space used: 339426925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)