BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0136.p
         (451 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase [Herba...   941   0.0  
gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase r...    76   6e-15

>gi|300312256|ref|YP_003776348.1| histidyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/451 (100%), Positives = 451/451 (100%)

Query: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60
           MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG
Sbjct: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60

Query: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120
           LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH
Sbjct: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120

Query: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180
           ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN
Sbjct: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180

Query: 181 KHRADLIAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRA 240
           KHRADLIAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRA
Sbjct: 181 KHRADLIAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRA 240

Query: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300
           HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF
Sbjct: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300

Query: 301 GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360
           GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL
Sbjct: 301 GGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360

Query: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQ 420
           DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQ
Sbjct: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKGGTATVKHMREGNAEEGRANQ 420

Query: 421 NSLPFDGVVDYIVEQIVGDHDHDHDHVHYHP 451
           NSLPFDGVVDYIVEQIVGDHDHDHDHVHYHP
Sbjct: 421 NSLPFDGVVDYIVEQIVGDHDHDHDHVHYHP 451


>gi|300312248|ref|YP_003776340.1| ATP phosphoribosyltransferase
           regulatory subunit [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 149/374 (39%), Gaps = 51/374 (13%)

Query: 14  KGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARGLGEVTDIVEKEMY 73
           + + D+LP++A   E     +    + YG++ +  P++E       G G+ TD+     +
Sbjct: 8   ENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDL---RTF 64

Query: 74  SFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRHERPQ-RGRYRQFH 132
              D ++G  L +R + T  V R    H L      RL Y G +  H RP      R+  
Sbjct: 65  KLVDQLSGRTLGVRADMTTQVARID-AHLLNRASVTRLCYAGSVL-HTRPTGLHATREPI 122

Query: 133 QVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIG-------NAEERNKHRAD 185
           Q+GAE  G +G + DAE+  +        G+  IRL+L  +G       N     +  A 
Sbjct: 123 QIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDEAQ 182

Query: 186 LIAYFEQHKDLLDTDAQRRLHANPLRILDTKNPAMQEMVNAAPKLLDYLGEESRAH---- 241
           L A   Q KD+               I  T     +  + A P L   +   +RA     
Sbjct: 183 LFALL-QAKDVPGLQ----------EITATYQEGTRAALLALPNLYGDISVIARARITLP 231

Query: 242 -FEGVQKILR-----------HNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCG 289
              G+ + L            H     TI+   +RG  Y++  +F       G    V  
Sbjct: 232 ALPGIAQALDELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVP--GLPNAVVR 289

Query: 290 GGRYDPLIEMFGGKPTPACGFAMGVERLLELMKASGEQYAPNQCDVYLVHQGEDAQLQSF 349
           GGRYD + E F G+  PA GF++ +  L  LM  +  + A       L   G DA L+  
Sbjct: 290 GGRYDHVGEAF-GRARPATGFSLDLRELARLMPGAERKRA------ILAPWGRDAGLREK 342

Query: 350 VLAERLRTAGLDVV 363
           +   +LR AG  V+
Sbjct: 343 I--AQLRQAGEIVI 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,455,406
Number of extensions: 65269
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,203,190
Effective search space: 436757970
Effective search space used: 436757970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)