BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0120.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 431 e-122 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 238 3e-64 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 222 2e-59 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 222 2e-59 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 216 1e-57 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/220 (99%), Positives = 219/220 (99%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV Sbjct: 24 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 83 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 ESGVVQVAEGRATLTTLTVEENL LGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN Sbjct: 84 ESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 143 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV Sbjct: 144 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 203 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 236 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG Sbjct: 204 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 238 bits (608), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 117/219 (53%), Positives = 161/219 (73%), Gaps = 1/219 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIV 76 EA+ G+SL++ +GEI L+GANGAGK+T L+ + G +A GRV+ GQD+ Q+ H I+ Sbjct: 16 EALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIFEGQDITQLQTHEIM 75 Query: 77 ESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGN 136 G+ EGR +LTV ENL +GA+ + + + + +E+V+ LFP LK RAA AG Sbjct: 76 RRGLAISPEGRRVFPSLTVLENLKMGAFFASN-EAIEQGIEYVFGLFPRLKERAAQRAGT 134 Query: 137 LSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNV 196 +SGGEQQMLAIGRALM+KP++LLLDEP++GLAPL+I +IF I++ I ++G+TV LVEQN Sbjct: 135 MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNA 194 Query: 197 RQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 235 +AL +A RGYVLE G +V+ D+GANLL N V +AYLG Sbjct: 195 NKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 222 bits (566), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/221 (49%), Positives = 157/221 (71%), Gaps = 2/221 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRVLLHGQDLLQMSPHR 74 +AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + GQ L Sbjct: 19 QAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHIEYLGQPLKGKKSFE 78 Query: 75 IVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLA 134 +V+ + V EGR T ++++ENL +GAYT DK +A D++ +++FP LK RAA +A Sbjct: 79 LVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWFAVFPRLKERAAQMA 138 Query: 135 GNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQ 194 G LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ ++ G+T+LLVEQ Sbjct: 139 GTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQ 198 Query: 195 NVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 235 N + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 199 NAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 222 bits (566), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/221 (49%), Positives = 157/221 (71%), Gaps = 2/221 (0%) Query: 17 EAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRVLLHGQDLLQMSPHR 74 +AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + GQ L Sbjct: 19 QAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHIEYLGQPLKGKKSFE 78 Query: 75 IVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLA 134 +V+ + V EGR T ++++ENL +GAYT DK +A D++ +++FP LK RAA +A Sbjct: 79 LVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWFAVFPRLKERAAQMA 138 Query: 135 GNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQ 194 G LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ ++ G+T+LLVEQ Sbjct: 139 GTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQ 198 Query: 195 NVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 235 N + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 199 NAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 216 bits (551), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/224 (52%), Positives = 154/224 (68%), Gaps = 7/224 (3%) Query: 19 VKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL-----LHGQDLLQMSPH 73 +KG+SL + EG+I AL+GANGAGKST+L AIS L+ A+RG V G+ + +M+P+ Sbjct: 42 LKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPN 101 Query: 74 RIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDG-VARDLEWVYSLFPVLKNRAAG 132 +V+ GV+QV EGR LTVEENL GAYTR + V +LE +Y FP LK R Sbjct: 102 DLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKS 161 Query: 133 LAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEIN-KTGMTVLL 191 +G SGGEQQM AIGRA+MAKP ++LLDEPSMGLAP I++EIF IV+++N K ++ LL Sbjct: 162 QSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLL 221 Query: 192 VEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 235 EQN ALR A GY+LE G++V+E + + L N V E YLG Sbjct: 222 AEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 695,823 Number of extensions: 28982 Number of successful extensions: 470 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 139 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)