BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0119.p (243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 478 e-136 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 248 3e-67 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 239 2e-64 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 239 2e-64 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 222 3e-59 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 478 bits (1229), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/243 (99%), Positives = 242/243 (99%) Query: 1 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV 60 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV Sbjct: 1 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV 60 Query: 61 KAQRGRVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVA 120 KAQRGRVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENL LGAYTRKDKDGVA Sbjct: 61 KAQRGRVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVA 120 Query: 121 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ 180 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ Sbjct: 121 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ 180 Query: 181 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY Sbjct: 181 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 Query: 241 LGG 243 LGG Sbjct: 241 LGG 243 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 248 bits (634), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 122/233 (52%), Positives = 169/233 (72%), Gaps = 1/233 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +LQ + + YG IEA+ G+SL++ +GEI L+GANGAGK+T L+ + G +A GRV+ Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSL 129 GQD+ Q+ H I+ G+ EGR +LTV ENL +GA+ + + + + +E+V+ L Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASN-EAIEQGIEYVFGL 120 Query: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FP LK RAA AG +SGGEQQMLAIGRALM+KP++LLLDEP++GLAPL+I +IF I++ I Sbjct: 121 FPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTI 180 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++G+TV LVEQN +AL +A RGYVLE G +V+ D+GANLL N V +AYLG Sbjct: 181 RESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 239 bits (610), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 IL+V+ L+VAYG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 68 LLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVY 127 GQ L +V+ + V EGR T ++++ENL +GAYT DK +A D++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 128 SLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 ++FP LK RAA +AG LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++ G+T+LLVEQN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 239 bits (610), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 169/235 (71%), Gaps = 2/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 IL+V+ L+VAYG I+AVKGI L +NEGE+ L+GANGAGK+T+L AI+G + A R G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 68 LLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVY 127 GQ L +V+ + V EGR T ++++ENL +GAYT DK +A D++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 128 SLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 ++FP LK RAA +AG LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 ++ G+T+LLVEQN + AL A RGYV+E+G I ++ +L +P+V AYLG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 222 bits (565), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 8/240 (3%) Query: 11 LQVEDLAVAYGHIEAV-KGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL- 68 L + ++ V Y H+ V KG+SL + EG+I AL+GANGAGKST+L AIS L+ A+RG V Sbjct: 26 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 Query: 69 ----LHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDG-VARDL 123 G+ + +M+P+ +V+ GV+QV EGR LTVEENL GAYTR + V +L Sbjct: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHEL 145 Query: 124 EWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIF 183 E +Y FP LK R +G SGGEQQM AIGRA+MAKP ++LLDEPSMGLAP I++EIF Sbjct: 146 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 Query: 184 RIVQEIN-KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 IV+++N K ++ LL EQN ALR A GY+LE G++V+E + + L N V E YLG Sbjct: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 729,111 Number of extensions: 30583 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 313 Number of HSP's successfully gapped: 140 Length of query: 243 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,226,865 Effective search space: 196298400 Effective search space used: 196298400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)