BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0114.p
         (464 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312234|ref|YP_003776326.1| argininosuccinate lyase [Herbas...   945   0.0  

>gi|300312234|ref|YP_003776326.1| argininosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 464

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/464 (99%), Positives = 463/464 (99%)

Query: 1   MTDQFAKKGEAWSARFSEPVSDLVKRYTASVFFDNRMAQVDIQGSLAHAEMLAHQGIISA 60
           MTDQFAKKGEAWSARFSEPVSDLVKRYTASVFFDNRMAQVDIQGSLAHAEMLAHQGIISA
Sbjct: 1   MTDQFAKKGEAWSARFSEPVSDLVKRYTASVFFDNRMAQVDIQGSLAHAEMLAHQGIISA 60

Query: 61  ADYAEIQRGMAQIKGEIEAGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQV 120
           ADYAEIQRGMAQIKGEIEAGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQV
Sbjct: 61  ADYAEIQRGMAQIKGEIEAGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQV 120

Query: 121 ATDIRLYMRGAVDDIIGLLRELRLALLDLAEQHADTILPGFTHMQVAQPITFGHHVLAYV 180
           ATDIRLYMRGAVDDIIGLLRELRLALLDLAEQHADTILPGFTHMQVAQPITFGHHVLAYV
Sbjct: 121 ATDIRLYMRGAVDDIIGLLRELRLALLDLAEQHADTILPGFTHMQVAQPITFGHHVLAYV 180

Query: 181 EMFGRDAERMIDARKRINRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRD 240
           EMFGRDAERMIDARKRINRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRD
Sbjct: 181 EMFGRDAERMIDARKRINRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRD 240

Query: 241 FAIEFCAAAALVMTHISRMSEELVIWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELAR 300
           FAIEFCA AALVMTHISRMSEELVIWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELAR
Sbjct: 241 FAIEFCAGAALVMTHISRMSEELVIWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELAR 300

Query: 301 GKTGRVNGHLIALLTLMKGQPLAYNKDNQEDKEPLFDTVDTLTDTLRIFADMARGISVKP 360
           GKTGRVNGHLIALLTLMKGQPLAYNKDNQEDKEPLFDTVDTLTDTLRIFADMARGISVKP
Sbjct: 301 GKTGRVNGHLIALLTLMKGQPLAYNKDNQEDKEPLFDTVDTLTDTLRIFADMARGISVKP 360

Query: 361 EAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRTCVDKGCDLADLSLADLRAF 420
           EAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRTCVDKGCDLADLSLADLRAF
Sbjct: 361 EAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRTCVDKGCDLADLSLADLRAF 420

Query: 421 SDLIGEDVFAVLTLEGSVAARDHIGGTAPKQVRAAIAQLRKELN 464
           SDLIGEDVFAVLTLEGSVAARDHIGGTAPKQVRAAIAQLRKELN
Sbjct: 421 SDLIGEDVFAVLTLEGSVAARDHIGGTAPKQVRAAIAQLRKELN 464


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,273,989
Number of extensions: 46960
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 375
Effective length of database: 1,198,455
Effective search space: 449420625
Effective search space used: 449420625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)