BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0113.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312232|ref|YP_003776324.1| signal transduction protein [He... 553 e-159 gi|300311938|ref|YP_003776030.1| hypothetical protein Hsero_2626... 240 1e-64 gi|300311595|ref|YP_003775687.1| two component response regulato... 75 8e-15 gi|300310564|ref|YP_003774656.1| regulator of the two-component ... 68 7e-13 >gi|300312232|ref|YP_003776324.1| signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 553 bits (1426), Expect = e-159, Method: Compositional matrix adjust. Identities = 271/274 (98%), Positives = 272/274 (99%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 MNLEALFQQQTALPSIPKVV+EVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY Sbjct: 1 MNLEALFQQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA Sbjct: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 Query: 121 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD Sbjct: 121 KRGKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 Query: 181 VGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATF 240 VGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATF Sbjct: 181 VGAELARRWRFPDEFAKVIEAFPQPLQGEFDPFAAIVHLAAWRARAHENQYSDEELAATF 240 Query: 241 PTEVAERLGVRLETFTQEMPPLAELGEGMQELIA 274 P EVAERLGVRLETFTQEMPPL ELGEGMQELIA Sbjct: 241 PAEVAERLGVRLETFTQEMPPLEELGEGMQELIA 274 >gi|300311938|ref|YP_003776030.1| hypothetical protein Hsero_2626 [Herbaspirillum seropedicae SmR1] Length = 290 Score = 240 bits (612), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 176/289 (60%), Gaps = 16/289 (5%) Query: 1 MNLEALFQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYY 60 M L++L Q LP++PKVV++++ SFN E +S EIA+++A D LSAK+LRLANS+++ Sbjct: 1 MELKSLVDQPGKLPTVPKVVQQLMASFNAEDISAHEIAQQIATDPALSAKVLRLANSAFF 60 Query: 61 HVSRTIGTVDDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTALVAKWLA 120 H SRTIGTVDDA+ +LGF+ VR LV+ GM +FK G+DL FWR++L TA+ A+WLA Sbjct: 61 HASRTIGTVDDALRILGFIMVRNLVLGNGMVAAFKNTRGMDLHQFWRHTLYTAVAARWLA 120 Query: 121 KR----GKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGY 176 G+ N D FTVG+MH IGQL +HA +D+ + LD+ R + E++++G+ Sbjct: 121 MHAGMVGEDNGDAVFTVGMMHGIGQLQLHAVAANAVAPLDRHSNVLDSDRAEREKEAWGF 180 Query: 177 DFADVGAELARRWRFPDEFAKVIEAFPQPL-QGEFDPFAAIVHLAAWRARAHENQYSDEE 235 +ADV AELA W FPD + + P PL G FD AA VHL W AR DE Sbjct: 181 HYADVSAELAAIWHFPDALVTALRSVPDPLGAGRFDRAAAWVHLGGWAARVAILSQDDEN 240 Query: 236 LAATFPTEVAERLGV-----------RLETFTQEMPPLAELGEGMQELI 273 AT+P V ++LGV + + MP L EL G+ ++ Sbjct: 241 AQATYPAAVGKKLGVDPAWMPLLVKHDPDKAERAMPSLGELAAGLDAML 289 >gi|300311595|ref|YP_003775687.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 74.7 bits (182), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 99/197 (50%), Gaps = 5/197 (2%) Query: 7 FQQQTALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTI 66 Q LP+ V ++++ E +++ E+ ++ D VL+ +++++AN + R + Sbjct: 13 MQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQIANIPNINKGRMV 72 Query: 67 GTVD-DAVLMLGFMTVRTLVVSTGMAGSFKK--LPGVDLKLFWRYSLDTALVAKWLAKRG 123 +V+ + +LM+G VR + ++ + S ++ D FW S A + L Sbjct: 73 ASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTAMACAGQALGDLL 132 Query: 124 KLNSDF-AFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVG 182 ++ FT+GL+ IGQL + + P++ ++ +AG DA+ ER+SFG+D + Sbjct: 133 QVAPPAEMFTIGLLAGIGQLGLASARPKRYGEL-LLAGAKDAQLRVQERESFGFDHLALA 191 Query: 183 AELARRWRFPDEFAKVI 199 A + + W FP F + + Sbjct: 192 AAMMQDWHFPRIFCEAV 208 >gi|300310564|ref|YP_003774656.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 68.2 bits (165), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 9/201 (4%) Query: 12 ALPSIPKVVREVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTIGTVD- 70 ALPS V ++ ++ + E+ + AD LS +I+R+ N R I +V Sbjct: 18 ALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRIVNVLNAQRVRPIASVSM 77 Query: 71 DAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKL--FWRYSLDTALVAKWLAKRGKLNS- 127 D++L++G VR L ++ +A + + L FW +S A A+ + + ++ Sbjct: 78 DSLLLVGLQAVRQLALALSLAETRAPASCANFSLPAFWAHSFAMACSAQAVTSQLRVAPL 137 Query: 128 DFAFTVGLMHAIGQLVMHAGMPE--QALQVDKVAGPLDARRLDVERKSFGYDFADVGAEL 185 FT GL+ IG+L + + P AL + P ARR +E+ FG++ ++ A L Sbjct: 138 GEMFTTGLLANIGKLTLASAQPTGYSALLTRALDAP--ARR-AMEQSLFGFNHLNIAAAL 194 Query: 186 ARRWRFPDEFAKVIEAFPQPL 206 + W+ PD F + + P+ Sbjct: 195 MQDWKIPDLFCDAVLHYETPV 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 838,029 Number of extensions: 34773 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 4 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)