BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0103.p
         (535 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   989   0.0  
gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558...   137   3e-33

>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/511 (99%), Positives = 510/511 (99%)

Query: 25  VNKSTLAWAACLVFSLVSGMPAQAQSAYPPAPAVYTQQQLDQMLAPVALYPDSLLAQVLM 84
           +NKSTLAWAACLVFSLVSGMPAQAQSAYPPAPAVYTQQQLDQMLAPVALYPDSLLAQVLM
Sbjct: 1   MNKSTLAWAACLVFSLVSGMPAQAQSAYPPAPAVYTQQQLDQMLAPVALYPDSLLAQVLM 60

Query: 85  ASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMMNDRLDWMQ 144
           ASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMMNDRLDWMQ
Sbjct: 61  ASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAMMNDRLDWMQ 120

Query: 145 QLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQDDFIEIVPVNPQVVYVPYY 204
           QLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQDDFIEIVPVNPQVVYVPYY
Sbjct: 121 QLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVVVQDDFIEIVPVNPQVVYVPYY 180

Query: 205 NPVVVYGDWWWPSAPPVVWAPPPRYRPPSYNPGFSASISFSTGIGVMSAVFGEARPDWRE 264
           NPVVVYGDWWWPSAPPVVWAPPPRYRPPSYNPGFSASISFSTGIGVMSAVFGEARPDWRE
Sbjct: 181 NPVVVYGDWWWPSAPPVVWAPPPRYRPPSYNPGFSASISFSTGIGVMSAVFGEARPDWRE 240

Query: 265 RQVMVTQTRITNVNNINNNVVNNRIVNNNVTINRNVTVNQRPVVWHHEGRYGAGRAVPPP 324
           RQVMVTQTRITNVNNINNNVVNNRIVNNNVTINRNVTVNQRPVVWHHEGRYGAGRAVPPP
Sbjct: 241 RQVMVTQTRITNVNNINNNVVNNRIVNNNVTINRNVTVNQRPVVWHHEGRYGAGRAVPPP 300

Query: 325 PALAAQAAPRPSPQGQPQAAAGMPSWRDHGPQPGPARPLPVADNPQQRIAQQDQMRQRQA 384
           PALAAQAAPRPSPQGQPQAAAGMPSWRDHGPQPGPARPLPVADNPQQRIAQQDQMRQRQA
Sbjct: 301 PALAAQAAPRPSPQGQPQAAAGMPSWRDHGPQPGPARPLPVADNPQQRIAQQDQMRQRQA 360

Query: 385 VEQQRQREQQANDQQRQREQMEREQQRQHEQQAQDQRQQQQAQERQWQQRQQQMQMQMQQ 444
           VEQQRQREQQANDQQRQREQ+ REQQRQHEQQAQDQRQQQQAQERQWQQRQQQMQMQMQQ
Sbjct: 361 VEQQRQREQQANDQQRQREQIVREQQRQHEQQAQDQRQQQQAQERQWQQRQQQMQMQMQQ 420

Query: 445 QHQQQMQQQQLQQQQREQQMRQQHQQQEQQREQQRQQQMMNQQREQQQRQMEQARQQQEQ 504
           QHQQQMQQQQLQQQQREQQMRQQHQQQEQQREQQRQQQMMNQQREQQQRQMEQARQQQEQ
Sbjct: 421 QHQQQMQQQQLQQQQREQQMRQQHQQQEQQREQQRQQQMMNQQREQQQRQMEQARQQQEQ 480

Query: 505 MRREQQARQQPPREPHPRREERRDDRRDERS 535
           MRREQQARQQPPREPHPRREERRDDRRDERS
Sbjct: 481 MRREQQARQQPPREPHPRREERRDDRRDERS 511


>gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 118/230 (51%), Gaps = 34/230 (14%)

Query: 62  QQLDQMLAPVALYPDSLLAQVLMASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDP 121
           +QL QM+AP+AL+PD L+AQVL  +TYP +VV A +++     L+GD L  A    PWD 
Sbjct: 57  EQLSQMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDV 116

Query: 122 SVKALVQFPSVLAMMNDRLDWMQQLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQR 181
           SVK+L  FP+VL+ M    DW + LG AF+     VM+ +Q LR +A+ AG L+SSPQ R
Sbjct: 117 SVKSLTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLR 176

Query: 182 VVVQDDFIEIV------PVN-------------------PQVVYVPYYNPVVVYGDWWWP 216
           V   +     V      PV                    P  VYVP Y+P VVYG     
Sbjct: 177 VSTTERSTSTVRYETPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYG----- 231

Query: 217 SAPPVVWAPPPRYRPPSY--NPGFSASISFSTGIGVMSAVFGEARPDWRE 264
              PV   P   YRPPS+  +     ++SF  G+ V  A+   +   W +
Sbjct: 232 --APVPVYPGYVYRPPSHVADEVVVGALSFGVGVFVGEAISHHSDWGWHD 279


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,742
Number of extensions: 22735
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,193,720
Effective search space: 531205400
Effective search space used: 531205400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)