BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0100.p (416 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 666 0.0 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 432 e-122 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 383 e-107 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 370 e-103 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 356 2e-99 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/407 (88%), Positives = 374/407 (91%) Query: 1 MAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAAAEHLQLSI 60 MAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAA EHLQLSI Sbjct: 154 MAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADEHLQLSI 213 Query: 61 YLTIAAATLVIVMVSVLSLLLVRNIRHSLHAATELADAIGRGDLSSQIVLRGRDEVTQLM 120 YLTIAAATLVIVMVS LSLLLVRNIRHSLHAATELAD IGRGDLSSQIVLRGRDEVTQLM Sbjct: 214 YLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADTIGRGDLSSQIVLRGRDEVTQLM 273 Query: 121 LSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQLT 180 LSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQLT Sbjct: 274 LSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQLT 333 Query: 181 TTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGIAF 240 TTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGIAF Sbjct: 334 TTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGIAF 393 Query: 241 QTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSASAAREIKELIDDSVAKVASGSR 300 QTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSASAAREIKELIDDSV KV SGSR Sbjct: 394 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVNKVQSGSR 453 Query: 301 LVTQAGHTMEEVVASVRRVTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQ 360 LV QAG TMEEVV SVRRV+GIV +IS AS EQS+G+ Q++QAI MD+ TQQNAALVE+ Sbjct: 454 LVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEE 513 Query: 361 AAAASQSLQDQAVNLAQVVGVFRLGRQAQLTGEEVTAQDTEDCTVIA 407 AAAASQSL++QA LAQ V VFRL R A+ E T E ++A Sbjct: 514 AAAASQSLREQAKGLAQAVSVFRLERSAEAPQPESTEPVQEQPAMLA 560 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 432 bits (1110), Expect = e-122, Method: Compositional matrix adjust. Identities = 254/375 (67%), Positives = 297/375 (79%), Gaps = 1/375 (0%) Query: 12 EDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAAAEHLQLSIYLTIAAATLVI 71 E+ALR A+E+ + P G +L+A L EH+ Y EQLGRQG E A LQ S Y I + LV Sbjct: 138 EEALR-AIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGILQSSTYQAILVSLLVA 196 Query: 72 VMVSVLSLLLVRNIRHSLHAATELADAIGRGDLSSQIVLRGRDEVTQLMLSLQRMTGSLV 131 +V SLL+ R I SL A +A+AI GDLSS++ + G+DEV QL+ ++ MT SLV Sbjct: 197 AIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDEVGQLLHAIGEMTASLV 256 Query: 132 QILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQLTTTVKQNADNAR 191 I+G V S A IE+A+ EIASGNLDLS+RTEAQAGS+EET SAM QLT TVKQNADNA Sbjct: 257 NIVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASAMEQLTATVKQNADNAH 316 Query: 192 QADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGIAFQTNILALNAAV 251 QAD LA SAS VA + GKVV EV+ TM+AIN+SSLKIVDIISVIDGIAFQTNILALNAAV Sbjct: 317 QADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVIDGIAFQTNILALNAAV 376 Query: 252 EAARAGEQGRGFAVVAAEVRTLAQRSASAAREIKELIDDSVAKVASGSRLVTQAGHTMEE 311 EAARAGEQGRGFAVVA+EVR+LAQRSASAAREIKELIDDSV KV SGSRLV QAG+TME+ Sbjct: 377 EAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKVQSGSRLVMQAGNTMEQ 436 Query: 312 VVASVRRVTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQ 371 VV SV+RV+ IV +IS AS EQS+G+ Q++QAI MD+ TQQNAALVE+AAAASQSL++Q Sbjct: 437 VVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAASQSLREQ 496 Query: 372 AVNLAQVVGVFRLGR 386 A LAQ V VFRL R Sbjct: 497 AKGLAQAVSVFRLER 511 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust. Identities = 214/385 (55%), Positives = 283/385 (73%), Gaps = 1/385 (0%) Query: 4 VDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAAAEHLQLSIYLT 63 + L +AG+ + R A+ P RL + E + YNE++ + GA A E + + Sbjct: 131 LKLANAGQWNEAR-ALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQETMAAARLHA 189 Query: 64 IAAATLVIVMVSVLSLLLVRNIRHSLHAATELADAIGRGDLSSQIVLRGRDEVTQLMLSL 123 I + VI +V+++ LL+ R I SL A ELA+ I GDL+ +I DE+ LM ++ Sbjct: 190 ILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDTSSTDEIGHLMAAM 249 Query: 124 QRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQLTTTV 183 +M +LV I+ V T+ A+ +IA+GN+DLS+RTE QA SLE+T +A +LT+TV Sbjct: 250 AKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTV 309 Query: 184 KQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGIAFQTN 243 KQNA+NA QAD+LA +ASG+A + G+VV +V+ TME I +SSL I DIISVIDGIAFQTN Sbjct: 310 KQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTN 369 Query: 244 ILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSASAAREIKELIDDSVAKVASGSRLVT 303 ILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSASAA+EIK+LIDDSV+KV +GS+LV Sbjct: 370 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVM 429 Query: 304 QAGHTMEEVVASVRRVTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAA 363 AG+TM++VV SVRRVT +VTEISAASREQS G++Q++QAIS MD+ TQ+NAALVE+A A Sbjct: 430 SAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATA 489 Query: 364 ASQSLQDQAVNLAQVVGVFRLGRQA 388 A+QSLQ+QA L + V VF+L ++A Sbjct: 490 AAQSLQEQARQLERAVNVFKLRQEA 514 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust. Identities = 216/354 (61%), Positives = 272/354 (76%) Query: 37 HKNYNEQLGRQGAEAAAEHLQLSIYLTIAAATLVIVMVSVLSLLLVRNIRHSLHAATELA 96 + ++ +Q+ Q A A + + +A + IV+ + L+ LL R+I L+ A +A Sbjct: 164 YADFQKQVIDQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIA 223 Query: 97 DAIGRGDLSSQIVLRGRDEVTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNL 156 + + GDL+S+I RDE +L+ +L+ M G+L+ I+G+V TI TA+REIA+GNL Sbjct: 224 ETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNL 283 Query: 157 DLSSRTEAQAGSLEETVSAMGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVIL 216 DLS+RTEAQAGSLEET SAM QLT+TVKQNADNARQA+ELA SAS VA Q G VVD+V+ Sbjct: 284 DLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVA 343 Query: 217 TMEAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQR 276 TM AI+ASS KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR Sbjct: 344 TMGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 403 Query: 277 SASAAREIKELIDDSVAKVASGSRLVTQAGHTMEEVVASVRRVTGIVTEISAASREQSEG 336 SASAA+EIK+LIDDSV KV GSRLV +AG TM+EVV SV RVT +V EI+ AS+EQS+G Sbjct: 404 SASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDG 463 Query: 337 LQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNLAQVVGVFRLGRQAQL 390 ++Q++ AI+ +DE TQQNAALVEQAAAA++S+QDQA +L V VFRL AQ+ Sbjct: 464 IEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQV 517 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 356 bits (913), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/320 (65%), Positives = 245/320 (76%) Query: 76 VLSLLLVRNIRHSLHAATELADAIGRGDLSSQIVLRGRDEVTQLMLSLQRMTGSLVQILG 135 V + L I LH A +++ + GDLSS+I + RDE QL+ SL+ M SL I+ Sbjct: 206 VFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVS 265 Query: 136 KVNDSAATIETATREIASGNLDLSSRTEAQAGSLEETVSAMGQLTTTVKQNADNARQADE 195 V TI TA+ EIA+GNLDLSSRTE QA SL ET SAM +L +TV+QNADNARQA + Sbjct: 266 NVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQ 325 Query: 196 LAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIISVIDGIAFQTNILALNAAVEAAR 255 LA SAS VA Q G VV +V+ TM AINASS KIVDIISVIDGIAFQTNILALNAAVEAAR Sbjct: 326 LANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAAR 385 Query: 256 AGEQGRGFAVVAAEVRTLAQRSASAAREIKELIDDSVAKVASGSRLVTQAGHTMEEVVAS 315 AGEQGRGFAVVA+EVRTLAQRSASAA+EIKELI+DSV KV GSRLV QAG+TM+EVV+S Sbjct: 386 AGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSS 445 Query: 316 VRRVTGIVTEISAASREQSEGLQQISQAISAMDEGTQQNAALVEQAAAASQSLQDQAVNL 375 VRRVT IV EISAAS EQ+ G++QI+ AI+ MD+ TQQNAALVE+AAAA+ S+Q QA L Sbjct: 446 VRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRL 505 Query: 376 AQVVGVFRLGRQAQLTGEEV 395 Q+V VFRL + L E+ Sbjct: 506 MQMVSVFRLSEREPLVRREI 525 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 800,743 Number of extensions: 23014 Number of successful extensions: 344 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 70 Length of query: 416 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 328 Effective length of database: 1,203,190 Effective search space: 394646320 Effective search space used: 394646320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)