BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0095.p (857 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312205|ref|YP_003776297.1| nitrite reductase large subunit... 1763 0.0 gi|300312207|ref|YP_003776299.1| FAD-dependent pyridine nucleoti... 206 6e-54 >gi|300312205|ref|YP_003776297.1| nitrite reductase large subunit [Herbaspirillum seropedicae SmR1] Length = 857 Score = 1763 bits (4565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 855/857 (99%), Positives = 856/857 (99%) Query: 1 MKIIVIGHGMVGHKFLECLAESGAGDLQVTILCEEPRPAYDRVHLSEFFAGKTAEDLSLV 60 MKIIVIGHGMVGHKFLECLAESGAGDLQVTILCEEPRPAYDRVHLSEFFAGKTAEDLSLV Sbjct: 1 MKIIVIGHGMVGHKFLECLAESGAGDLQVTILCEEPRPAYDRVHLSEFFAGKTAEDLSLV 60 Query: 61 APGFFDRGRSAVQFDLKLNAKAQQIDLERKQVLVNVAGVEETMSYDKLVLATGSYPFVPT 120 APGFFDRGRSAVQFDLKLNAKAQQIDLERKQVLVNVAGVEETMSYDKLVLATGSYPFVPT Sbjct: 61 APGFFDRGRSAVQFDLKLNAKAQQIDLERKQVLVNVAGVEETMSYDKLVLATGSYPFVPT 120 Query: 121 VAGNQRKDCFVYRTIEDLEAMLECGSRSKSGVVIGGGLLGLECAKALRDLKLETHVVEFA 180 VAGNQRKDCFVYRTIEDLEAMLECGSRSK GVVIGGGLLGLECAKALRDLKLETHVVEFA Sbjct: 121 VAGNQRKDCFVYRTIEDLEAMLECGSRSKIGVVIGGGLLGLECAKALRDLKLETHVVEFA 180 Query: 181 PRLMAVQVDESGGRVLRQKIEELGVTAHTQKNTVEIVDGKHHTHRMNFEDGSHLETDMIV 240 PRLMAVQVDESGGRVLRQKIEELGVTAHTQKNTVEIVDGKHHTHRMNFEDGSHLETDMIV Sbjct: 181 PRLMAVQVDESGGRVLRQKIEELGVTAHTQKNTVEIVDGKHHTHRMNFEDGSHLETDMIV 240 Query: 241 FSAGIRPRDELARQAGLKVGDRGGIAIDNSCLTSDPAVYAIGECALWNGKIFGLVAPGYD 300 FSAGIRPRDELARQAGLKVGDRGGIAIDNSCLTSDPAVYAIGECALWNGKIFGLVAPGYD Sbjct: 241 FSAGIRPRDELARQAGLKVGDRGGIAIDNSCLTSDPAVYAIGECALWNGKIFGLVAPGYD 300 Query: 301 MARTAAKHLLSHRDEAIEVPAFNGADMSTKLKLMGVDVASIGDAHGKEAGSRSYQFTDER 360 MARTAAKHLLSHRDEAIEVPAFNGADMSTKLKLMGVDVASIGDAHGKEAGSRSYQFTDER Sbjct: 301 MARTAAKHLLSHRDEAIEVPAFNGADMSTKLKLMGVDVASIGDAHGKEAGSRSYQFTDER 360 Query: 361 KQIYKKIVVSESGKHLLGAVMVGDASEYGTLLQMMLNKIELPESPEFLILPQSDGKAKPG 420 KQIYKKIVVSESGKHLLGAVMVGDASEYGTLLQMMLNKIELPESPEFLILPQSDGKAKPG Sbjct: 361 KQIYKKIVVSESGKHLLGAVMVGDASEYGTLLQMMLNKIELPESPEFLILPQSDGKAKPG 420 Query: 421 LGVDALPESAQICSCNNVSKGQLCAAVASGVTNIGELKACTKAGTACGGCVPLVTQVMKA 480 LGVDALPESAQICSCNNVSKGQLCAAVASGVTNIGELKACTKAGTACGGCVPLVTQVMKA Sbjct: 421 LGVDALPESAQICSCNNVSKGQLCAAVASGVTNIGELKACTKAGTACGGCVPLVTQVMKA 480 Query: 481 EMKKQGLAVNNHVCEHFPYSRQEIHHLVRVGQIKSFDELLAKHGKGLGCDVCKPMVANVL 540 EMKKQGLAVNNHVCEHFPYSRQEIHHLVRVGQIKSFDELL+KHGKGLGCDVCKPMVANVL Sbjct: 481 EMKKQGLAVNNHVCEHFPYSRQEIHHLVRVGQIKSFDELLSKHGKGLGCDVCKPMVANVL 540 Query: 541 ASLWNDFVLKKEHAGLQDSNDYFLGNIQKDGTYSVVPRMAGGEVTPDGLIAVGQIAKKYG 600 ASLWNDFVLKKEHAGLQDSNDYFLGNIQKDGTYSVVPRMAGGEVTPDGLIAVGQIAKKYG Sbjct: 541 ASLWNDFVLKKEHAGLQDSNDYFLGNIQKDGTYSVVPRMAGGEVTPDGLIAVGQIAKKYG 600 Query: 601 LYTKITGGQRVDLFGARVDQLPDIWEELIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVG 660 LYTKITGGQRVDLFGARVDQLPDIWEELIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVG Sbjct: 601 LYTKITGGQRVDLFGARVDQLPDIWEELIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVG 660 Query: 661 DSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKDVGIIATEKGWNLYVCGNGGM 720 DSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKDVGIIATEKGWNLYVCGNGGM Sbjct: 661 DSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKDVGIIATEKGWNLYVCGNGGM 720 Query: 721 KPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTSTWRENLEGGLDYLKSVVLDDK 780 KPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTSTWRENLEGGLDYLKSVVLDDK Sbjct: 721 KPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTSTWRENLEGGLDYLKSVVLDDK 780 Query: 781 LGIAAELEAEMQRVVDTYECEWKKAVTDPETRKRFRHFVNSKAADGNIKFVEERGQIRPA 840 LGIAAELEAEMQRVVDTYECEWKKAVTDPETRKRFRHFVNSKAADGNIKFVEERGQIRPA Sbjct: 781 LGIAAELEAEMQRVVDTYECEWKKAVTDPETRKRFRHFVNSKAADGNIKFVEERGQIRPA 840 Query: 841 TVAEKKLLDIPVVVETV 857 TVAEKKLLDIPVVVETV Sbjct: 841 TVAEKKLLDIPVVVETV 857 >gi|300312207|ref|YP_003776299.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 413 Score = 206 bits (524), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 139/397 (35%), Positives = 211/397 (53%), Gaps = 26/397 (6%) Query: 3 IIVIGHGMVGHKFLECLAESGAGDLQVTILCEEPRPAYDRVHLSEFFAG-KTAEDLSLVA 61 ++V+G+GM G + +E L + +T+ EP Y+R+ LS AG K+ +D+ L Sbjct: 14 LVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDIMLNP 73 Query: 62 PGFFDRGRSAVQFDLKLNAKAQQIDLERKQVLVNVAGVEETMSYDKLVLATGSYPFVPTV 121 ++D + L+A + ++R+Q V+ A T+ YD+L+LATGS PF+ V Sbjct: 74 RAWYDDN------GITLHAGDPVVHIDRRQRTVH-AKSGLTVQYDRLLLATGSTPFIIPV 126 Query: 122 AGNQRKDCFVYRTIEDLEAMLECGSRSKSGVVIGGGLLGLECAKALRDLKLETHVVEFAP 181 G+Q +R I+D++AML+ + VVIGGGLLGLE A L ++ VV Sbjct: 127 PGHQLPGVIAFRDIQDVDAMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVTD 186 Query: 182 RLMAVQVDESGGRVLRQKIEELGVTAHTQKNTVEIVDGKHHTHRMNFEDGSHLETDMIVF 241 LM Q+D+ +L++ +E+ G+ +T EIV G + F+DGS + D++V Sbjct: 187 ALMNQQLDKPAAALLKKALEDKGLRFLLNAHTEEIV-GPDRVTAVRFKDGSSIPADLVVM 245 Query: 242 SAGIRPRDELARQAGLKVGDRGGIAIDNSCLTSDPAVYAIGECALWNGKIFGLVAPGYDM 301 +AG+RP LA+ AGL I +D++ T DP VYA+GEC FGLVAP +D Sbjct: 246 TAGVRPNIALAKAAGLHC--ERAIIVDDTLQTYDPRVYAVGECVQHRKATFGLVAPIWDQ 303 Query: 302 ARTAAKHL--LSHRDEAIEVPAFNGADMSTKLKLMGVDVASIGDAHGKEAGSRSYQFTDE 359 AR HL HR + A TKLK+ GVD+ S GD G + + D Sbjct: 304 ARVCGAHLAGAGHRRYVQQATA-------TKLKVTGVDLYSAGDFIGGD-DTEDLIVRDP 355 Query: 360 RKQIYKKIVVSESGKHLLGAVMVGDASE---YGTLLQ 393 R+ +YK++V+ G L+GAV+ GD + Y L+Q Sbjct: 356 RRGVYKRLVL--RGTRLVGAVLYGDVKDGPWYFDLIQ 390 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,685,170 Number of extensions: 114430 Number of successful extensions: 343 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 3 Length of query: 857 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 764 Effective length of database: 1,179,515 Effective search space: 901149460 Effective search space used: 901149460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)