BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0092.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894...   353   6e-99
gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner m...    80   8e-17
gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase [Herbaspi...    64   9e-12

>gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  353 bits (905), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 174/177 (98%), Positives = 175/177 (98%)

Query: 1   VQPICCHLTPPDATMTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSAL 60
           +QPICCHL PPDATMTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSAL
Sbjct: 1   MQPICCHLMPPDATMTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSAL 60

Query: 61  VTMAAMNFALGAEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVT 120
           VTMAAMNFALGAEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQ TEKVRGLTTAASIWVT
Sbjct: 61  VTMAAMNFALGAEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQWTEKVRGLTTAASIWVT 120

Query: 121 AAVGIVCGAGWWQVALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED 177
           AAVGIVCGAGWWQVALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED
Sbjct: 121 AAVGIVCGAGWWQVALMATGLILILFVIGRPLEQFLHRQWMRKSDDERADISAREED 177


>gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score = 80.5 bits (197), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 6/143 (4%)

Query: 15  MTDYLEIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTM-AAMNFA--LG 71
           M    E+  RL  + ++G  IGI+R       G++T  LV++GS L+ + +A  FA  L 
Sbjct: 1   MISATEVILRLTVSAVLGSLIGIERERLSWAAGLRTHMLVSVGSTLIMLVSAYGFANILQ 60

Query: 72  AEDHNRDAVSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAGW 131
           ++    D  SR    V++GIGFLGAG I+   R E +RGLTTAAS+W  AA+G+  G G 
Sbjct: 61  SDKVVLDP-SRMAAQVVSGIGFLGAGSIL--LRGEIIRGLTTAASLWTVAAIGLAVGGGM 117

Query: 132 WQVALMATGLILILFVIGRPLEQ 154
           +  A+  T ++L++    +PLE+
Sbjct: 118 YVAAVAGTFIVLLILAGMKPLER 140


>gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score = 63.5 bits (153), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)

Query: 20  EIFHRLLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSALVTMAAMNFALGAEDHNRDA 79
           + F  L  A ++G  IG++R  R +  G++T  LVALG+A+    A   A        + 
Sbjct: 14  DTFISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANRLA------GHEG 67

Query: 80  VSRAIQGVITGIGFLGAGVIIHEQRTEKVRGLTTAASIWVTAAVGIVCGAGWWQVALMAT 139
               +  V++G+GFLGAGVI+ E+    VRG+ TAA++W +AAVG   GA     A++AT
Sbjct: 68  AVHVVAYVVSGVGFLGAGVIMREEG--NVRGINTAATLWGSAAVGAAAGADLILEAILAT 125

Query: 140 GLILILFVIGRPLEQFLHRQ 159
             +L    + RP+   ++R+
Sbjct: 126 IFVLAANTLLRPVVNTINRK 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 569,710
Number of extensions: 23903
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)