BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0084.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312194|ref|YP_003776286.1| organic solvents resistance ABC...   608   e-175

>gi|300312194|ref|YP_003776286.1| organic solvents resistance ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 305

 Score =  608 bits (1569), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/305 (99%), Positives = 305/305 (100%)

Query: 1   METRAHHVLIGLFTILVALGALGFCLWLTKAGQDRDVDYYTVIFNEAVSGLSRGSPVQYS 60
           METRAHHVLIGLFTILVALGALGFCLWLTKAGQDRDVDYYTVIFNEAVSGLSRGSPVQYS
Sbjct: 1   METRAHHVLIGLFTILVALGALGFCLWLTKAGQDRDVDYYTVIFNEAVSGLSRGSPVQYS 60

Query: 61  GIKVGDVVGLSLDPADPRKVRARIRVVGRAPIKEDTGAKLALAGITGTALIQLTNGSPQS 120
           GIKVGDVVGLSLDPADPRKVRARIRVVGRAPIKEDTGAKLALAGITGTALIQLTNGSPQS
Sbjct: 61  GIKVGDVVGLSLDPADPRKVRARIRVVGRAPIKEDTGAKLALAGITGTALIQLTNGSPQS 120

Query: 121 PRLESKDGSDPVIIASPSPLSALLSNGEDLLGNVNEVLINAKQFLAPNNARRLNATLAHL 180
           PRLESKDGSDPVIIASPSPLSALLSNGEDLLGNVNEVLINAKQFLAP+NARRLNATLAHL
Sbjct: 121 PRLESKDGSDPVIIASPSPLSALLSNGEDLLGNVNEVLINAKQFLAPDNARRLNATLAHL 180

Query: 181 EELTSTLAAQRNNAGAAMQELAEAARQANLAMQSANQLLSTRGNDAMSNLQQAMRSLAAS 240
           EELTSTLAAQRNNAGAAMQELAEAARQANLAMQSANQLLSTRGNDAMSNLQQAMRSLAAS
Sbjct: 181 EELTSTLAAQRNNAGAAMQELAEAARQANLAMQSANQLLSTRGNDAMSNLQQAMRSLAAS 240

Query: 241 SQQVERLIQQNQAALNNGAQGVAEIGPAIAELRATLSSVRAVSRKLESNPGAYLLGHDNV 300
           SQQVERLIQQNQAALNNGAQGVAEIGPAIAELRATLSSVRAVSRKLESNPGAYLLGHDNV
Sbjct: 241 SQQVERLIQQNQAALNNGAQGVAEIGPAIAELRATLSSVRAVSRKLESNPGAYLLGHDNV 300

Query: 301 QEFQP 305
           QEFQP
Sbjct: 301 QEFQP 305


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 777,412
Number of extensions: 27971
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)