BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0083.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC... 542 e-156 gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC... 170 1e-43 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 159 2e-40 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 147 1e-36 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 135 4e-33 >gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 542 bits (1397), Expect = e-156, Method: Compositional matrix adjust. Identities = 277/278 (99%), Positives = 277/278 (99%) Query: 1 MVRPQHAPATRGGDGVDPIIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSV 60 MVRPQHAPATRGGDGVDPIIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSV Sbjct: 1 MVRPQHAPATRGGDGVDPIIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSV 60 Query: 61 LLRSIVGLLHPAAGEVRVFGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALP 120 LLRSIVGLL PAAGEVRVFGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALP Sbjct: 61 LLRSIVGLLRPAAGEVRVFGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALP 120 Query: 121 LTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFL 180 LTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFL Sbjct: 121 LTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFL 180 Query: 181 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADR 240 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADR Sbjct: 181 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADR 240 Query: 241 IEAVAAYDDAWIRQYFQGPRGRAASLAALRAHPTQGQP 278 IEAVAAYDDAWIRQYFQGPRGRAASLAALRAHPTQGQP Sbjct: 241 IEAVAAYDDAWIRQYFQGPRGRAASLAALRAHPTQGQP 278 >gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 135/214 (63%), Gaps = 1/214 (0%) Query: 44 RGEILGVVGGSGTGKSVLLRSIVGLLHPAAGEVRVFGQDLTALSSEARSGYERRFGVLFQ 103 RG+++ V+GGSG+GK+ +LR I G L P G+V V G+++ L+++ R+ G+LFQ Sbjct: 5 RGKVVAVMGGSGSGKTTILRLIGGQLRPQQGKVEVDGENVPDLATKQLFLLRRKMGMLFQ 64 Query: 104 QGALFSSLTVLENIALPLTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAALSGGMIK 163 GALF+ +TV +N+A PL E+ L+ R + MKL GL AA K PA +SGGM + Sbjct: 65 NGALFTDMTVFDNVAFPLREHTDLDETLIRDLVLMKLNAVGLRNAASLK-PAEISGGMAR 123 Query: 164 RAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAI 223 R ALARA+ALDP ++ DEP AGLDPIS LI L DALG T LV+HD++ +AI Sbjct: 124 RVALARAIALDPALIMYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAI 183 Query: 224 CDRIAVLSSRRVLVADRIEAVAAYDDAWIRQYFQ 257 D + LS+ +++ E + + D ++RQ+ Sbjct: 184 ADHVYFLSAGKIVAQGTPEELRSSTDPYVRQFVH 217 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 19 IIEVRGLRNQFGTQVVHEQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLLHPAAGEVRV 78 +IE++ + +FG ++DL +R+GEI G++G SG GKS L+R++ L P +G + + Sbjct: 1 MIEIQAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 Query: 79 FGQDLTALSSEARSGYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNADEARGVAAM 138 GQDLT+LS+ R G++FQ L SS +V +NIALPL G A+ A V + Sbjct: 61 DGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPL 120 Query: 139 KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 198 L L GL A D+YPA +SGG +R +ARALA DP +L DE T+ LDP + + L Sbjct: 121 -LELVGLT-ALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILEL 178 Query: 199 ILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVL 236 + + LGLT+ L+TH ++ + ICDR+AV+ + +V+ Sbjct: 179 LRKINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVI 216 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/193 (40%), Positives = 119/193 (61%), Gaps = 1/193 (0%) Query: 38 LDLQVRRGEILGVVGGSGTGKSVLLRSIVGLLHPAAGEVRVFGQDLTALSSEARSGYERR 97 ++L + +GE+ G++G SG GKS L+R++ L P +G V + G+D+T L EA G +R Sbjct: 24 INLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDITGLGHEALLGLRQR 83 Query: 98 FGVLFQQGALFSSLTVLENIALPLTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPAAL 157 G++FQ L ++ TV +NI PL G + +E L L GL A D+YP+ L Sbjct: 84 VGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQLVGLD-AHRDQYPSQL 142 Query: 158 SGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDL 217 SGG +R +ARALA P +L DE T+ LDP + + RL+L + LGLT+ L+TH++ Sbjct: 143 SGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEINRKLGLTIVLITHEM 202 Query: 218 DTLYAICDRIAVL 230 + + +ICDR+AVL Sbjct: 203 EVIRSICDRVAVL 215 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 135 bits (339), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 113/200 (56%), Gaps = 2/200 (1%) Query: 36 EQLDLQVRRGEILGVVGGSGTGKSVLLRSIVGLLHPAAGEVRVFGQDLTALSSEARSGYE 95 + +DL++ G I G++G SG GKS LLR+I L P +G V V DL L Sbjct: 59 QDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVALR 118 Query: 96 RRFGVLFQQGALFSSLTVLENIALPLTEYGGLNADEARGVAAMKLALAGLPIAAGDKYPA 155 RR G++FQ L ++ TV +NIALPL G A + V + LAL GL A D YP Sbjct: 119 RRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHEL-LALVGLQDKA-DSYPR 176 Query: 156 ALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTH 215 LSGG +R +ARALA P+IL DE T+ LDP + + +L+ + LG+T+ L+TH Sbjct: 177 RLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIILITH 236 Query: 216 DLDTLYAICDRIAVLSSRRV 235 ++ + I DR+ VL RV Sbjct: 237 EMSVIREIADRVLVLEQGRV 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 818,797 Number of extensions: 31688 Number of successful extensions: 485 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 149 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)