BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0082.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC...   744   0.0  
gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC...    84   1e-17

>gi|300312192|ref|YP_003776284.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   LDNNASFRLDSASPPVLHVEGDWTLRNYRALSRQIAQARPALGEQTVLEFSALSAFDTVG 60
           LDNNASFRLDSASPPVLHVEGDWTLRNYRALSRQIAQARPALGEQTVLEFSALSAFDTVG
Sbjct: 4   LDNNASFRLDSASPPVLHVEGDWTLRNYRALSRQIAQARPALGEQTVLEFSALSAFDTVG 63

Query: 61  AKLLVDLLGVPAALRQTQADSTLAPAWRALLAVVAEAKAIAMPKPAPPRQAWITDMLERV 120
           AKLLVDLLGVPAALRQTQADSTLAPAWRALLAVVAEAKAIAMPKPAPPRQAWITDMLERV
Sbjct: 64  AKLLVDLLGVPAALRQTQADSTLAPAWRALLAVVAEAKAIAMPKPAPPRQAWITDMLERV 123

Query: 121 GAATLSLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTF 180
           GAATLSLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTF
Sbjct: 124 GAATLSLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTF 183

Query: 181 MVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMK 240
           MVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMK
Sbjct: 184 MVGAVVAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMK 243

Query: 241 ANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTM 300
           ANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTM
Sbjct: 244 ANEEIDAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTM 303

Query: 301 FLSLLQQDVGIRHFILGMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVVQSIFV 360
           FLSLLQQDVGIRHFILGMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVVQSIFV
Sbjct: 304 FLSLLQQDVGIRHFILGMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVVQSIFV 363

Query: 361 VILLDALAALFFMEMGW 377
           VILLDALAALFFMEMGW
Sbjct: 364 VILLDALAALFFMEMGW 380


>gi|300313364|ref|YP_003777456.1| organic solvents resistance ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 3/231 (1%)

Query: 126 SLRACALGLLGFMGLCLQTLLSSFWRPSRWRVTAVVAQIEQTGLDAVPIVSLLTFMVGAV 185
           SLR   +G+ GF G    ++L S     R R   +  QI   G  ++ I+++    VG V
Sbjct: 12  SLREFVVGV-GFAGRMFASMLGSSLGLLR-RPRLITDQIHFIGNYSLVIIAVSGLFVGFV 69

Query: 186 VAFLGATVLANFGASIYTVDLVAFSFLREFAVLLTAILMAGRTASSFTAQIGSMKANEEI 245
           +   G   L  +G+      LVA S  RE   ++TA+L AGR  +S TA+IG MKA E++
Sbjct: 70  LGLQGYYTLNKYGSEQALGLLVALSLTRELGPVVTALLFAGRAGTSLTAEIGLMKAGEQL 129

Query: 246 DAIRALGLDPIKLLVLPRLIALLVAMPALTFIAMLSGLFGGAMVCALSLDISPTMFLSLL 305
            A+  + ++P++ +V PR  A ++AMP L  I    G+ GG +V  L + +    F S +
Sbjct: 130 SAMEMMAVNPLQRVVAPRFWAGVIAMPVLAAIFSAVGVIGGYVVGVLLIGVDEGAFWSQM 189

Query: 306 QQDVGIRHFIL-GMVKAPLFAFVVAVIGCNEGFKVSGSAQSVGQHTTSSVV 355
           Q  V + + I  G++K+ +F   V  +   +G++   + + V + TT +VV
Sbjct: 190 QGGVDVWNDIANGVLKSVVFGVAVTFVALFQGYEAKPTPEGVARATTRTVV 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,016,078
Number of extensions: 37885
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)