BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0080.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312190|ref|YP_003776282.1| hemolysin-type calcium binding ...   573   e-165

>gi|300312190|ref|YP_003776282.1| hemolysin-type calcium binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1139

 Score =  573 bits (1477), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 355/368 (96%), Positives = 356/368 (96%), Gaps = 4/368 (1%)

Query: 67  MAITITINRMSTLASAKAYVPGGSGAAQHHAAERREGLVRAGPLALWLQGNRWHAVAAAQ 126
           MAITITINRMSTLASAKAYVPGGSGAAQH AAERREGLVRAGPLALWLQGNRWHAVAAAQ
Sbjct: 1   MAITITINRMSTLASAKAYVPGGSGAAQHDAAERREGLVRAGPLALWLQGNRWHAVAAAQ 60

Query: 127 GITPTAAFLPWQGWSAARRRTFQPIISCCPVRRPVVQARHELAVNKPHQQSLPVALASPA 186
           GITPTAAFLPWQGWSAAR RTFQPIISCCPVRRPVVQARHELAVNKPHQQSLPVALASPA
Sbjct: 61  GITPTAAFLPWQGWSAARWRTFQPIISCCPVRRPVVQARHELAVNKPHQQSLPVALASPA 120

Query: 187 APMSVAAAASGQSASVAAAPSAKSAQESAPAIKRLRVEDAMVVTSAPACPATQDCLLPIA 246
           APMSVAAAASGQSASVAA PSAKSAQESAP IKRLR EDAMVVTSAPACPATQDCLLPIA
Sbjct: 121 APMSVAAAASGQSASVAATPSAKSAQESAPTIKRLRAEDAMVVTSAPACPATQDCLLPIA 180

Query: 247 APLRSAVQPADPGGSGKAAANPPSICPVVNVTPSPCDQTETVWVLPGTSECVPLSEAFPP 306
           APLRSAVQPADPGGSGKAAANPPSICPVVNVTPSPCDQTETVWVLPGTSECVPLSEAFPP
Sbjct: 181 APLRSAVQPADPGGSGKAAANPPSICPVVNVTPSPCDQTETVWVLPGTSECVPLSEAFPP 240

Query: 307 GVQISVSDCVPVPLSTLIKRLFPDLIIKPSPSASSPTPAATPAPAPSPVVSTAPVATPTV 366
           GVQISVSDCVPVPLSTLIKRLFPDLIIKPSPSASSPTPAATPAPAPSPVVSTAPVATPTV
Sbjct: 241 GVQISVSDCVPVPLSTLIKRLFPDLIIKPSPSASSPTPAATPAPAPSPVVSTAPVATPTV 300

Query: 367 APAGGATVTPVIAPIS----APVSTPVSAPASAPTVTPSATPAPTPAPASIPSVAPSVAP 422
           APAGGATVTPVIAP S    AP+S PVSAPASAPTVTPSATPAPTPAPAS PSVAPSVAP
Sbjct: 301 APAGGATVTPVIAPASKPVIAPISAPVSAPASAPTVTPSATPAPTPAPASTPSVAPSVAP 360

Query: 423 ATTPPVAS 430
           ATTPPVAS
Sbjct: 361 ATTPPVAS 368


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,056,333
Number of extensions: 44629
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 3
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)