BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0078.p (726 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 1466 0.0 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 286 5e-78 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 285 1e-77 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 250 2e-67 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 234 2e-62 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 1466 bits (3794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 723/726 (99%), Positives = 724/726 (99%) Query: 1 MNETDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMT 60 MNETDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMT Sbjct: 1 MNETDKDHPPADIDSGLQCLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMT 60 Query: 61 AKCLHQQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQ 120 AKCLHQQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQ Sbjct: 61 AKCLHQQRERLERTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQ 120 Query: 121 RDFEALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLIT 180 RDFEALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLIT Sbjct: 121 RDFEALWSGQVILFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLIT 180 Query: 181 PMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRL 240 PMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRL Sbjct: 181 PMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRL 240 Query: 241 FSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSV 300 FSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSV Sbjct: 241 FSHLLSLPLSYFQVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSV 300 Query: 301 SLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPR 360 SLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPR Sbjct: 301 SLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPR 360 Query: 361 WQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELV 420 WQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELV Sbjct: 361 WQQKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELV 420 Query: 421 AFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVHGAISFD 480 AFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRV+GAISFD Sbjct: 421 AFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLPRVNGAISFD 480 Query: 481 LVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQ 540 LVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQ Sbjct: 481 LVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQ 540 Query: 541 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICEL 600 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICEL Sbjct: 541 DIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICEL 600 Query: 601 PEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI 660 PEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI Sbjct: 601 PEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQI 660 Query: 661 CAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAGHAGL 720 CAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAGHAGL Sbjct: 661 CAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQAGHAGL 720 Query: 721 IEEGAA 726 IEE A Sbjct: 721 IEERTA 726 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 286 bits (731), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 204/558 (36%), Positives = 310/558 (55%), Gaps = 34/558 (6%) Query: 178 LITPMFFQVVMDKVLV---NHAMMTLNVIAV---GLIAATVFEAVLTGIRTAIFANASSK 231 L+ P +MD VL+ N A + ++ + GL+ A V L RT I A S + Sbjct: 197 LVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTYILALVSER 256 Query: 232 IDVELGSRLFSHLLSLPLSYFQVRRAGDSIARV-RELENIRSFLTGNAMTLVLDIMFSFV 290 I +L + +SHLL L YF +R GD +AR+ E + I FL+ + + +D++ + Sbjct: 257 IGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIM 316 Query: 291 FLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNK----SAENQSFLVETL 346 +++ + L+L+ L +P + V +R+RL F K +E + L +T+ Sbjct: 317 TAAILISINPWLALVTLLPLPFIAWMIHV----VRDRLRHGFEKIDRIWSEVTNVLADTI 372 Query: 347 TGMDTVKAMAVEPRWQQKWDKQLAAYVAAG----LTTTNISLLASGAVGLVSKLVTVGIM 402 G+ VKA A E R ++A + A + ++ + S V+ L VG++ Sbjct: 373 PGIRVVKAFAQEKR-------EVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLL 425 Query: 403 --WL-GALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDA 459 W+ G V N+++VG L AF + + + ++++ + Q+ R+ D+LD Sbjct: 426 VVWVFGIWQVSSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDH 485 Query: 460 RTEVA--GNRTRLPRVHGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGK 517 + V N L +V GAI + FRY VIR +SL I PGE+IG+VG SGSGK Sbjct: 486 VSSVPEPANPVHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGK 543 Query: 518 STLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADP 577 ST+ L+ R Y G I +DG DI + + R+ IG+VLQE LF +I +NIA P Sbjct: 544 STMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKP 603 Query: 578 STPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILI 637 E+II AA+ A AH+FI LP+GYD++VGE+G LSGG+RQRI+IARAL+ +P ILI Sbjct: 604 EATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILI 663 Query: 638 FDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHD 697 DEATS++D +EK IQ + + GRT + IAHRLS +R ADR++V++RG+V E G+H+ Sbjct: 664 LDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHE 723 Query: 698 ELIDLPGGIYAHLHRLQA 715 EL+ G Y L++ QA Sbjct: 724 ELMAREGHYY-KLYQAQA 740 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 182/522 (34%), Positives = 295/522 (56%), Gaps = 20/522 (3%) Query: 215 AVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGD---SIAR-VRELENI 270 A+ T +R +FA + + + ++F HL +L L + R+ G I R R + ++ Sbjct: 96 ALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSL 155 Query: 271 RSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPL---LRER 327 S+ + + +++I +L + Y V S+I ++ Y+L ++ T R Sbjct: 156 VSYTLFSILPTLIEIALVLAYL--ITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRT 213 Query: 328 LNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTT-TNISLLA 386 +N+ + A ++ +++L +TVK E +++D+ L Y A + + +++SLL Sbjct: 214 MNE-LDSHANTRA--IDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLN 270 Query: 387 SGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLWNDFQQI 446 +G +++ VT+ I+W + V+ M++G++V N Q+ P+ L L+ + +Q Sbjct: 271 TGQSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQS 329 Query: 447 GISMSRLADVLDARTEVAGNRTRLP-RVHGA-ISFDLVSFRYRPETPEVIRGLSLQIRPG 504 M RL +L+ EVA + P + GA + FD V F Y +++ + ++ G Sbjct: 330 LADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYE-RNRQILFDVDFTVQAG 388 Query: 505 EVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLF 564 +VG SGSGKSTL++L+ R Y + G I +DGQD+ + ASLRQ IG+V Q+ LF Sbjct: 389 TTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLF 448 Query: 565 SRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIA 624 + +I NIA P EQI+ AAK A HDFI LP+GY +MVGE+G LSGG++QR+A Sbjct: 449 NDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEKQRVA 508 Query: 625 IARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIV 684 IAR L+ +P ILIFDEATSALD +E+ IQ + +I RT L+IAHRLS + +A +I+V Sbjct: 509 IARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILV 568 Query: 685 MERGRVAESGSHDELIDLPGGIYAHLHRLQAGHAGLIEEGAA 726 ++ GR+ E G+H L+ + GG+YA + Q AG EEG + Sbjct: 569 LDHGRIVERGTHAGLL-MAGGLYAQMWLRQ--QAGADEEGGS 607 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 195/593 (32%), Positives = 311/593 (52%), Gaps = 29/593 (4%) Query: 141 AQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMD---KVLVNHAM 197 A++S+ +P + Y+K L +V L P F+ ++D + + Sbjct: 28 ARKSALAALRGLLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGAAGSKSA 87 Query: 198 MTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRA 257 +N+ + L V T +R + + ++ +L S +++H+++ +F+ + Sbjct: 88 SHINLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKT 147 Query: 258 GDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWY-SVSLSLIVLASIPVYVLL 316 G+ ++R+ + L G ++++ L F+ ML++ S L+ I++ + VL Sbjct: 148 GEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVMLAAVVLP 207 Query: 317 SLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEP----RWQQKWDKQLAAY 372 + + +R+ ++ A+ + E L M TV+A E R+ Q ++ Sbjct: 208 IVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVERAFGTA 267 Query: 373 V----AAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQ 428 + A L T LL GA+ V ++WLGA V++ MS GEL F + A Sbjct: 268 MERVRARSLLTVVAILLVFGAI--------VFVLWLGAHAVMEGSMSGGELGQFILYASL 319 Query: 429 VASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAG---NRTRLPRVH--GAISFDLVS 483 VA + L+++ D Q+ + RL D+L A + V PR A++ V Sbjct: 320 VAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVD 379 Query: 484 FRY--RPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQD 541 F Y RP P + + LSL ++PGE + IVG SG+GK+TL +L+ R Y + G+I +DG D Sbjct: 380 FHYPSRPGHPSLTQ-LSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVD 438 Query: 542 IAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELP 601 I +D +LR IG+V Q+ +FS + +NI P ++I AA++A AH+FI LP Sbjct: 439 IRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLP 498 Query: 602 EGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQIC 661 Y +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q + Sbjct: 499 GSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAM 558 Query: 662 AGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQ 714 GRT L+IAHRL+ V+ ADRIIV+E GR+ ESG+H EL+ G+YA L LQ Sbjct: 559 VGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARD-GLYAGLAALQ 610 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 234 bits (598), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 172/562 (30%), Positives = 293/562 (52%), Gaps = 12/562 (2%) Query: 159 YRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLNVIAVGLIAATVFEAVLT 218 Y+K LA + +V + P FQV++DK V +L ++ V +I + T Sbjct: 16 YKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIAT 75 Query: 219 GIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSI-ARVRELENIRSFLTGN 277 + + S++I EL ++F+ +L LPL ++ G I + + E++ I +T Sbjct: 76 FTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMMFEVQQIIDMVTKV 135 Query: 278 AMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFTPLLRERLNDKFNKSAE 337 +++ + L +L+ + L+++ L +P+ L+ L++ D +AE Sbjct: 136 FTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAE 195 Query: 338 NQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLASGAVGL-VSKL 396 + ET +K + +++++++ A L + + + A+ + + +++L Sbjct: 196 MTQVIEETTRAQQVIKIFGGQDYEKERFNRR-----AENLRSYTMRMTAAFSSTVPITQL 250 Query: 397 VT---VGIMWLGALLVVKN-EMSVGELVAFNMLAGQVASPILRLAQLWNDFQQIGISMSR 452 +T V ++ + AL+ N +++VG V+F + +P+ +LA++ Q+ + Sbjct: 251 MTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEE 310 Query: 453 LADVLDARTEVAGNRTRLPRVHGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGR 512 + ++D TE R G + F V F Y ++ ++L + GE I VG Sbjct: 311 VYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGM 370 Query: 513 SGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNI 572 SG GKSTL L+ Y C +G I +DG+DI I SLRQQI +V Q LF ++ NI Sbjct: 371 SGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAANI 430 Query: 573 ALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITN 632 A D + ++ A + A D + LPEG T +G+ GS LSGGQRQR+AIARA+ + Sbjct: 431 AYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRVAIARAIYKD 490 Query: 633 PGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAE 692 ILI DEATSALD ESE+ +Q + ++ GRT +IAHRLS + ADRI+V+ G++AE Sbjct: 491 APILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAE 550 Query: 693 SGSHDELIDLPGGIYAHLHRLQ 714 G+H L++ G+YA+L+RLQ Sbjct: 551 IGTHQALLE-QEGVYANLYRLQ 571 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,030,016 Number of extensions: 80020 Number of successful extensions: 670 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 497 Number of HSP's successfully gapped: 135 Length of query: 726 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 634 Effective length of database: 1,184,250 Effective search space: 750814500 Effective search space used: 750814500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 134 (56.2 bits)