BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0075.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...   405   e-114
gi|300312188|ref|YP_003776280.1| hemolysin secretion-related tra...    62   3e-11

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  405 bits (1041), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MSDEAAIRKALAILLICLLAPVAPVAAADTESLRIGDPLLARPPDLITGRLLPGDDQRVE 60
           MSDEAAIRKALAILLICLLAPVAPVAAADTESLRIGDPLLARPPDLITGRLLPGDDQRVE
Sbjct: 1   MSDEAAIRKALAILLICLLAPVAPVAAADTESLRIGDPLLARPPDLITGRLLPGDDQRVE 60

Query: 61  CAASPYVAGKALSLADAIDQALCQQPQIQAAWAAIKLQAAQLGEARAGYLPTVTSGASKL 120
           CAASPYVAGKALSLADAIDQALCQQPQIQAAWAAIKLQAAQLGEARAGYLPTVTSGASKL
Sbjct: 61  CAASPYVAGKALSLADAIDQALCQQPQIQAAWAAIKLQAAQLGEARAGYLPTVTSGASKL 120

Query: 121 NSATQYEGGSGRRSLTTLYATLTWRLLDFGGRSANQRAADAMLQSALASHDAAVQKALAS 180
           NSATQYEGGSGRRSLTTLYATLTWRLLDFGGRSANQRAADAMLQSALASHDAAVQKALAS
Sbjct: 121 NSATQYEGGSGRRSLTTLYATLTWRLLDFGGRSANQRAADAMLQSALASHDAAVQKALAS 180

Query: 181 VVASYYEVQSSSASQQAREKSQQLAR 206
           VVASYYEVQSSSASQQAREKSQQLAR
Sbjct: 181 VVASYYEVQSSSASQQAREKSQQLAR 206


>gi|300312188|ref|YP_003776280.1| hemolysin secretion-related
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 447

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 30/33 (90%)

Query: 203 QLARFRARLGRLDDEISRYGAALKLATQRASDY 235
           Q   FRARLGRLDDEISRYGAALKLATQRASDY
Sbjct: 191 QYQDFRARLGRLDDEISRYGAALKLATQRASDY 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 542,349
Number of extensions: 18248
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)