BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0062.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine...   453   e-128
gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...   120   2e-28
gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine...    67   2e-12

>gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  453 bits (1165), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/223 (99%), Positives = 221/223 (99%)

Query: 1   MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60
           MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS
Sbjct: 1   MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60

Query: 61  HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPR 120
           HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQAL ARHPR
Sbjct: 61  HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPR 120

Query: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGMYAYSN 180
           LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGT DDVVKAGCSIADIAAGMYAYSN
Sbjct: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSN 180

Query: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223
           ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA
Sbjct: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGA 223


>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 12/219 (5%)

Query: 7   PLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWTN 66
           PL GI V+ L   IA PFC+R LA+ GA VIK+E PG GD  R +    +G S  +    
Sbjct: 10  PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69

Query: 67  RSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCDI 126
           R+K+S+TLN+KDE  + I  +L  +ADV+++N  PG      L  + L+  +P  I+  +
Sbjct: 70  RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129

Query: 127 SGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQD-DVVKAGCSIADIAAGMYAYSNILAAL 185
           SGYG+ GP RD   +  + +S  G   V+G  D   V+ G SI D  A ++     + AL
Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189

Query: 186 IKR--------GREGRE---GRGSHIDLSMLESLAEWMS 213
             R        G++G +   G+G  +D+++ E++   M 
Sbjct: 190 RHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMME 228


>gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 30/205 (14%)

Query: 6   RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65
           RPL GI V+ L   +A P  TR LA LGA V++I+  G            N +    +  
Sbjct: 206 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGW--------EEPNTVPEVVL-- 255

Query: 66  NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALQARHPRLIVCD 125
              K    LNLKD      + +L+  AD+LV      A A LGL A   +  +P LI   
Sbjct: 256 --GKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 313

Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTQDDVVKAGCSIADIAAGM--------YA 177
           +  YG  G ++ ++ +D LIQ   G          + +AG  +   AA +        +A
Sbjct: 314 LDAYGWSGAWQCRRGFDSLIQMSTG----------IAEAGMRVMGSAAPVNLPVQAIDHA 363

Query: 178 YSNILAALIKRGREGREGRGSHIDL 202
              ++AA   RG   R  RG  I++
Sbjct: 364 TGYLMAAAALRGLTLRMTRGVGIEV 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,057,928
Number of extensions: 36020
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)