BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0061.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit [Her...   509   e-146
gi|300312281|ref|YP_003776373.1| citrate lyase beta subunit [Her...    57   1e-09

>gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  509 bits (1312), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/277 (97%), Positives = 273/277 (98%)

Query: 1   VIASSYLFVPANRPERYAKALDSGVDAVIVDLEDAVAAPYKEAARETLSRWLAGPEGQAS 60
           +IASSYLFVPANRPERYAKALDSG DAVIVDLEDAVA PYKEAARETL+RWLAGPEGQAS
Sbjct: 1   MIASSYLFVPANRPERYAKALDSGADAVIVDLEDAVARPYKEAARETLARWLAGPEGQAS 60

Query: 61  QARLWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIE 120
           QARLWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIE
Sbjct: 61  QARLWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIE 120

Query: 121 SAAGLAAMRQIAAVPGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAA 180
           SAAGLAAMRQIAA PGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAA
Sbjct: 121 SAAGLAAMRQIAAAPGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAA 180

Query: 181 PVDGVTPGFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMA 240
           PVDGVT GFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMA
Sbjct: 181 PVDGVTAGFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMA 240

Query: 241 AVRASDGGAISLKGRMIDRPLILQAEKFLRQVGALHE 277
           AVRASDGGAISLKGRMIDRPLILQAEKFLRQVGALHE
Sbjct: 241 AVRASDGGAISLKGRMIDRPLILQAEKFLRQVGALHE 277


>gi|300312281|ref|YP_003776373.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 28/255 (10%)

Query: 28  VIVDLEDAVAAPYKEAARETLSRWLAGPEGQASQARLWVRINAADTVWHEQD---LLTFS 84
           +  D ED  AA  + A  E ++  + GP+      R+  R++       EQD   L   +
Sbjct: 46  ITFDCEDGAAAGNETAHAELVAALITGPDN--VHRRIGARLHDVSHPHFEQDVAILCGAA 103

Query: 85  ALPVAGIVLPKAEDAAGVGAVAGAL-----------RSGSGLIALIESAAGLAAMRQIAA 133
           A  +A ++LPK E   G+  V  AL           RS   +  L+E+   LA   +IAA
Sbjct: 104 ARELAYVMLPKPE---GIDDVLRALESIQRAARAAGRSDLPVQVLVETHGALADAWKIAA 160

Query: 134 VPGVQRLAFGSID-------AQLDLGMQCGPEEEELLSLRVEM-VLASRLAGIAAPVDGV 185
           +P VQ L+FG +D       A     M+   + +  L  R ++ + A+  A    P   V
Sbjct: 161 LPQVQSLSFGVMDFVSAHYGAIPGSAMRSPGQFDHPLVRRAKLDISAACHAHGKVPSHNV 220

Query: 186 TPGFDDEALLVRGVER-ARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMAAVRA 244
           T    + A +     R A+  G+     IHP Q+  + +   P+ +E   AA+++   +A
Sbjct: 221 TTDIKNPAAVADDACRAAQEFGYTRMWSIHPDQIRPIVQAMSPATEEADLAAQILLKAQA 280

Query: 245 SDGGAISLKGRMIDR 259
              G I   G + DR
Sbjct: 281 VQWGPIQHLGNLHDR 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 809,097
Number of extensions: 30482
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)