BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0057.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phospha...   619   e-179
gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phospha...    69   4e-13

>gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  619 bits (1597), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/309 (99%), Positives = 306/309 (99%)

Query: 1   MSTLPLIFIDGDQGTTGLQIHERLRARQDLRVLTLPAAERKDAQRRAEAINSADIALLCL 60
           MSTLPLIFIDGDQGTTGLQIHERLRARQDLRVLTLPAAERKDAQRRAEAINSADIALLCL
Sbjct: 1   MSTLPLIFIDGDQGTTGLQIHERLRARQDLRVLTLPAAERKDAQRRAEAINSADIALLCL 60

Query: 61  PDAAAREAVAMISNPRVRVIDASSAHRTSPDWVYGFPEMATGQAEAIATALRVSNPGCYP 120
           PDAAAREAVAMISNPRVRVIDASSAHRTSPDWVYGFPEMA GQAEAIATALRVSNPGCYP
Sbjct: 61  PDAAAREAVAMISNPRVRVIDASSAHRTSPDWVYGFPEMAAGQAEAIATALRVSNPGCYP 120

Query: 121 TGAIALLRPLVQAGLVPADYPLNIHAVSGYSGGGRAQVEQYEGAEAAHAAPFVTYGLGLQ 180
           TGAIALLRPLVQAGLVPADYPLNIHAVSGYSGGGRAQVEQYEGAEAAHAAPFVTYGLGLQ
Sbjct: 121 TGAIALLRPLVQAGLVPADYPLNIHAVSGYSGGGRAQVEQYEGAEAAHAAPFVTYGLGLQ 180

Query: 181 HKHPPEMQLHAGLSQRPLFVPSYGAFRQGIVLTIALQSRLLPAQASLERLRATLQAHYDG 240
           HKHPPEMQLHAGLSQRPLFVPSYGAFRQGIVLTIALQSRLLPAQASLERLRATLQAHYDG
Sbjct: 181 HKHPPEMQLHAGLSQRPLFVPSYGAFRQGIVLTIALQSRLLPAQASLERLRATLQAHYDG 240

Query: 241 AQYVTVLDAAQSESTTQLDPTRHNHSNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAV 300
           A YVTVLDAAQSESTTQLDPTRHNHSNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAV
Sbjct: 241 AHYVTVLDAAQSESTTQLDPTRHNHSNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAV 300

Query: 301 QNLDLMLAR 309
           QNLDLML R
Sbjct: 301 QNLDLMLTR 309


>gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 143/341 (41%), Gaps = 58/341 (17%)

Query: 9   IDGDQGTTGLQI--------HERLRARQDLRVLTLPAAERKDAQR-RAE-AINSADIALL 58
           I G  G TG+++          R++A    +   +P AE   + R R + A +S D A L
Sbjct: 6   IVGGTGYTGVELLRIFATHPEARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSPDKARL 65

Query: 59  CLPDA---AAREAVAMISNPR-----VRVIDASSAHRTS-----PDW------------- 92
              D    A    VAM   P      V+VID ++  R         W             
Sbjct: 66  TDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCTDLLKE 125

Query: 93  -VYGFPEMATGQAEAIATALRVSNPGCYPTGAIALLRPLVQAGLVPADYPLNIHAVSGYS 151
             YG PE+     EAI  A  V NPGCYPT       PL++AG++ A + L     SG S
Sbjct: 126 AAYGLPEL---NREAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASH-LIADCKSGVS 181

Query: 152 GGGRAQVEQYEGAEAAHAAPFVTYGLGLQHKHPPEM--QLHAGLSQRP--LFVPSYGAFR 207
           G GR        +EA+    F  YG+   H+H PE   +L    S +   LF P      
Sbjct: 182 GAGRKAELSLLFSEASDN--FKAYGVS-GHRHSPETIERLSHLTSDKVGLLFTPHLVPMI 238

Query: 208 QGIVLTIALQSRLLPAQASLERLRATLQAHYDGAQYVTVLD-AAQSESTTQLDPTRHNHS 266
           +G+  T+  +   L  +     L+A  +  Y    +V VL   A  E+ T    TR   S
Sbjct: 239 RGMHSTLYAR---LTKEIDNAALQALFEDAYKDEPFVDVLPFGAHPETRT----TR--AS 289

Query: 267 NQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAVQNLDLML 307
           N + L V        +++  V DNL KGASG AVQ ++LM 
Sbjct: 290 NMLRLAVHRPGDGDTVVVLVVQDNLVKGASGQAVQCMNLMF 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,042,290
Number of extensions: 45412
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)