BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0055.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790...   289   5e-80
gi|300312037|ref|YP_003776129.1| sensory transduction regulatory...    77   8e-16
gi|300312512|ref|YP_003776604.1| sensory transduction regulatory...    66   1e-12
gi|300313267|ref|YP_003777359.1| response regulator transcriptio...    59   2e-10

>gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  289 bits (740), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 142/144 (98%), Positives = 143/144 (99%)

Query: 1   MVQSQQLPRILIIDADLDAIETARFALWRSHLPCRIDWFDDAELANASLLTQALCQLRDQ 60
           MVQSQQLPRILIIDADLDAIETARFALWRSHL CRI+WFDDAELANASLLTQALCQLRDQ
Sbjct: 1   MVQSQQLPRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQ 60

Query: 61  PTLILLDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKP 120
           PTLILLDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKP
Sbjct: 61  PTLILLDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKP 120

Query: 121 ARPADYMELVTRCVQQRLKQPEMH 144
           ARPADYMELVTRCVQQRLKQPEMH
Sbjct: 121 ARPADYMELVTRCVQQRLKQPEMH 144


>gi|300312037|ref|YP_003776129.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 140

 Score = 76.6 bits (187), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 8   PRILIIDADLDAIETARFALWRSHLPCRIDWFDDAELANASLLT-QALCQLRDQPTLILL 66
           P IL++D   +++E ARF LWR+ L C   WF+DAE A  SL   QA     D P LILL
Sbjct: 4   PSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILL 63

Query: 67  DPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIW-YAAKPARPAD 125
           +PR  R  EG ELL  L  +     +P+V+F  S   +D A  +      Y  KP     
Sbjct: 64  EPRLPR-MEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARA 122

Query: 126 YMELVTRCVQQRL 138
           +MELV++ V++ L
Sbjct: 123 FMELVSQTVRRWL 135


>gi|300312512|ref|YP_003776604.1| sensory transduction regulatory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score = 65.9 bits (159), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 10/133 (7%)

Query: 8   PRILIIDADLDAIETARFALWRSHLPCRIDWFDDAELANASLLTQALCQLRDQPTLILLD 67
           P IL+I+++ +A+E ARFALWRS+  C + W+D+A+ A   LL +        P LILLD
Sbjct: 4   PIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLILLD 63

Query: 68  PRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAA-----KPAR 122
           P       G + +  +        IP+V+F      SD+  E  + +   A     KP  
Sbjct: 64  P-GMMENNGVDFILAMKAGRDTRSIPVVVFP----DSDYPPEMPDLLEAGASAYLLKPET 118

Query: 123 PADYMELVTRCVQ 135
              YM+ V  C Q
Sbjct: 119 APQYMQAVVECAQ 131


>gi|300313267|ref|YP_003777359.1| response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score = 58.5 bits (140), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 6   QLPRILIIDADLDAIETARFALWRSHLPCRIDWFDDAELANASLLTQALCQLRDQPTLIL 65
             P I++ID   +A E ARFALWR+ L C      D   A   LL+         P+LIL
Sbjct: 14  SFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLIL 73

Query: 66  LDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKPARPAD 125
           L+  +    +G ELLR L     LA+ P+V+F +     +  A       Y  KP     
Sbjct: 74  LE-SDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 132

Query: 126 YMELVTRCVQQ 136
           Y   V   V++
Sbjct: 133 YARCVVEMVER 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 409,063
Number of extensions: 14497
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 4
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)