BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0052.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312098|ref|YP_003776190.1| transmembrane protein [Herbaspi...   402   e-113

>gi|300312098|ref|YP_003776190.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  402 bits (1032), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   METNNAIVKSQSSRLHPLVAGAAVAVILVSLIGVAAMTGLLPSSKSANSPQQLAAVEQNA 60
           METNNAIVKSQSSRLHPLVAGAAVAVILVSLIGVAAMTGLLPSSKSANSPQQLAAVEQNA
Sbjct: 1   METNNAIVKSQSSRLHPLVAGAAVAVILVSLIGVAAMTGLLPSSKSANSPQQLAAVEQNA 60

Query: 61  GPMNPQQAPATRLAPQQAAYPSQSAEAPRAAAVCSSCGEVVAVRAVQHTPQTSGVGIAGG 120
           GPMNPQQAPATRLAPQQAAYPSQSAEAPRAAAVCSSCGEVVAVRAVQHTPQTSGVGIAGG
Sbjct: 61  GPMNPQQAPATRLAPQQAAYPSQSAEAPRAAAVCSSCGEVVAVRAVQHTPQTSGVGIAGG 120

Query: 121 AVVGGLLGNQIGGGNGRTLATIAGAVGGGYAGNMVEKNVRTTTTYVVDVRMDNGKSRSFP 180
           AVVGGLLGNQIGGGNGRTLATIAGAVGGGYAGNMVEKNVRTTTTYVVDVRMDNGKSRSFP
Sbjct: 121 AVVGGLLGNQIGGGNGRTLATIAGAVGGGYAGNMVEKNVRTTTTYVVDVRMDNGKSRSFP 180

Query: 181 QSGANWRVGDQVRVVNGHLESRG 203
           QSGANWRVGDQVRVVNGHLESRG
Sbjct: 181 QSGANWRVGDQVRVVNGHLESRG 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 403,607
Number of extensions: 9639
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)