BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0042.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 475 e-135 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 198 3e-52 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 172 3e-44 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 144 5e-36 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 136 2e-33 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 475 bits (1222), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/236 (99%), Positives = 236/236 (100%) Query: 1 MNDPLKNRQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHL 60 MNDPLKNRQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHL Sbjct: 1 MNDPLKNRQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHL 60 Query: 61 LGGLDTPSSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMI 120 LGGLDTPSSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMI Sbjct: 61 LGGLDTPSSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMI 120 Query: 121 RRVKRADAQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPSCVLADEPTG 180 RRVKRADAQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHP+CVLADEPTG Sbjct: 121 RRVKRADAQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPACVLADEPTG 180 Query: 181 NLDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSEQGLQAAAQQA 236 NLDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSEQGLQAAAQQA Sbjct: 181 NLDRSTADRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSEQGLQAAAQQA 236 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 198 bits (504), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 135/198 (68%), Gaps = 2/198 (1%) Query: 28 VKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFASLGESER 87 + +L +D V G +AIVGASGSGKSTLL LL GLDTPS G+V L G+D +L E R Sbjct: 34 LTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 Query: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQAREMLGKVGLAQRVTH 147 LR + LGFV+Q LL +AL+NV +PL +R RA +E+A EMLG+VGL R+ H Sbjct: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDARA--REKATEMLGRVGLGSRLKH 151 Query: 148 VPGELSGGERQRVALARALVTHPSCVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 P LSGGE+QRVALARA VT P +LADEPTG+LD +T + ELM EL+R G+ V+ Sbjct: 152 SPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVL 211 Query: 208 VTHDIELAGRCGRVLRLS 225 VTHD +A RC R + ++ Sbjct: 212 VTHDNAMAARCQRTITIA 229 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 140/219 (63%), Gaps = 1/219 (0%) Query: 8 RQAVLAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTP 67 R +L RGL + F G + VL +V++D++ GE VAIVGASGSGKSTL+++LG LD P Sbjct: 2 RTPLLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKP 61 Query: 68 SSGTVSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAD 127 S+G+ + G++ L E LR + GF++Q +HLL + A NV +P + ++ Sbjct: 62 SAGSYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQ 121 Query: 128 AQEQAREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPSCVLADEPTGNLDRSTA 187 +++A E+L ++GLA+R H PG+LSGG++QRV++ARAL+ +LADEPTG LD + Sbjct: 122 RRQRAGELLARLGLAERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSG 181 Query: 188 DRTFELMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSE 226 +++ EL G +IVTHD+++A R++ + + Sbjct: 182 QEVIKILKEL-HAEGHTIIIVTHDMQVASHAQRIIEIKD 219 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 144 bits (364), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 10/224 (4%) Query: 12 LAARGLGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGT 71 +A RG+GKT+ V+ L ++D+++ G I+G SG+GKS+LL + L+ P+SG Sbjct: 39 VALRGVGKTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGR 98 Query: 72 VSLLGKDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQ 131 V + D A+L E++ ALR + +G ++Q +LL + DN+A+PL + V RA ++ Sbjct: 99 VEVDDVDLATLDETQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQR 157 Query: 132 AREMLGKVGLAQRVTHVPGELSGGERQRVALARALVTHPSCVLADEPTGNLDRSTADRTF 191 E+L VGL + P LSGG++QRV +ARAL + P +L DE T LD T Sbjct: 158 VHELLALVGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSIL 217 Query: 192 ELMIELSRTLGTAFVIVTHDI----ELAGRC-----GRVLRLSE 226 +L+ +++R LG +++TH++ E+A R GRV L E Sbjct: 218 QLLRDINRKLGITIILITHEMSVIREIADRVLVLEQGRVAELGE 261 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 3/207 (1%) Query: 17 LGKTFTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLG 76 L KT+ G+ + L ++++D+ GE I+G SG+GKSTL+ L L+ P SG V + G Sbjct: 7 LHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDG 66 Query: 77 KDFASLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIR-RVKRADAQEQAREM 135 +D LG LR Q +G V+Q +LL + N+ PL I R R + + E+ Sbjct: 67 EDITGLGHEALLGLR-QRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDEL 125 Query: 136 LGKVGLAQRVTHVPGELSGGERQRVALARALVTHPSCVLADEPTGNLDRSTADRTFELMI 195 L VGL P +LSGG++QRV +ARAL HP +L DE T LD T L++ Sbjct: 126 LQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLL 185 Query: 196 ELSRTLGTAFVIVTHDIE-LAGRCGRV 221 E++R LG V++TH++E + C RV Sbjct: 186 EINRKLGLTIVLITHEMEVIRSICDRV 212 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 723,337 Number of extensions: 31044 Number of successful extensions: 466 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 298 Number of HSP's successfully gapped: 143 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)