BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0041.p (395 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 818 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 337 8e-94 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 81 1e-16 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 77 3e-15 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/395 (99%), Positives = 393/395 (99%) Query: 1 MESLKMNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFAT 60 MESL MNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFAT Sbjct: 1 MESLNMNTRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFAT 60 Query: 61 LPATAGPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIAT 120 LPATAGPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIAT Sbjct: 61 LPATAGPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIAT 120 Query: 121 ALALVPEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVV 180 ALALVPEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVV Sbjct: 121 ALALVPEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVV 180 Query: 181 VAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP 240 VAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP Sbjct: 181 VAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP 240 Query: 241 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFP 300 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFP Sbjct: 241 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFP 300 Query: 301 DARVEIDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGP 360 DARVEIDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGP Sbjct: 301 DARVEIDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGP 360 Query: 361 GDIGNAHKPNEFVTLAQMERCEQFLRKLGKSLQAA 395 GDIGNAHKPNEFVTLAQME CEQFLRKLGKSLQAA Sbjct: 361 GDIGNAHKPNEFVTLAQMEHCEQFLRKLGKSLQAA 395 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 337 bits (865), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 173/382 (45%), Positives = 236/382 (61%), Gaps = 10/382 (2%) Query: 8 TRQWLE---TLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPAT 64 TRQ L+ TL+ F+T SR SNL LI VRD L++ G + L ++ ++ KANLFATL Sbjct: 13 TRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAERRKANLFATL-GD 71 Query: 65 AGPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALAL 124 AGP G V SGHTDVVPV GQKWDTDPF DG L+ RG+CDMKGFIA +A Sbjct: 72 AGP----GRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMAR 127 Query: 125 VPEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHK 184 +P P+H +FS+DEE+GC+G +L ++ + I+ G ++GEPT M V+AHK Sbjct: 128 LPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAHK 187 Query: 185 GINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTM 244 G + C VHG +AHSS G N+I+ AA + IR+ A + +G D FDVP+S++ Sbjct: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDFDVPYSSI 247 Query: 245 TTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARV 304 T GG A N IP+ EF +E R LPG+ A++ ++ Y + +LP+MR + R+ Sbjct: 248 ATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRIDGVQGRI 307 Query: 305 EIDNFAGSPAL-EAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDI 363 E + P + + +T +R L G + RKV +GTE GLF Q G+P ++CGPGDI Sbjct: 308 EFETLTSYPGMCTPADDPLVTSALRIL-GSERARKVGFGTEGGLFGQAGMPAVICGPGDI 366 Query: 364 GNAHKPNEFVTLAQMERCEQFL 385 +AHKPNEFVTL Q+ RCE+F Sbjct: 367 AHAHKPNEFVTLEQLARCERFF 388 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 145/337 (43%), Gaps = 28/337 (8%) Query: 70 GSTEGGIVLSGHTDVVPVDG-QKWDTDPFKLTEKDGALYARGSCDMKGFIATALALVPEY 128 G+ + +V +GHTDVVP +KW + PF+ T ++G LY RG+ DMK IA + E+ Sbjct: 57 GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIAAMVVACEEF 116 Query: 129 LAM-PRVK-PIHLAFSFDEEIGCI-GAPVMLEEIVKRGIKVDGCVVGEPTSMNVV----- 180 A P K I + DEE I G V+ + RG ++D C+VGEPTS + Sbjct: 117 TAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIK 176 Query: 181 VAHKGINVFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP 240 +G V G H + N I AA + + A+ + A Y +P Sbjct: 177 NGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAEL--VAEQWDAGNEY----YLP 230 Query: 241 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFP 300 S +N G A N IP + FR +V +Q ++ +L K E+ Sbjct: 231 TSWQISNIHGGTGASNVIPGEVMIDFNFRFSTASTVEGLQQRV-----HAILDKHGLEY- 284 Query: 301 DARVEIDNFAGSPAL--EAVEQAAITELVRALTGDRQTRKVAYGTEAGLF-QQIGIPTIV 357 D + + G P L A+++ ++ TG GT G F QI I Sbjct: 285 DLKWTV---GGLPFLTPRGDLSDALSKAIKDETGLDTELSTTGGTSDGRFIAQICPQVIE 341 Query: 358 CGPGDIGNAHKPNEFVTLAQMERCEQFLRKLGKSLQA 394 GP + + HK +E + + ++ + RK ++L A Sbjct: 342 FGPPN-DSIHKIDEHIEVRYIDPLKNIYRKTLENLLA 377 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 137/321 (42%), Gaps = 21/321 (6%) Query: 76 IVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSC----DMKGFIATALALVPEYLAM 131 + L+ H DVVP G+ W DP+ DG +Y R + D ++ AL E + Sbjct: 92 LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATRAL--EAVGA 148 Query: 132 PRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGINVFAC 191 + L F++DEE G + P L E ++ + D V+ S NVV AH F Sbjct: 149 SLRGGVELHFTYDEEFGGLLGPGWLLE--QKLTRPD-YVLAAGFSYNVVTAHNACLQFEI 205 Query: 192 KVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMTTNQIRG 251 VHG++ H S+ G +A++ A ++ AI G K + TM +I G Sbjct: 206 TVHGRATHGSMPETGHDALQAATAILNAIYGALPGLKEI--RSAIPGITHPTMIVGRIDG 263 Query: 252 GIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVL--LPKMRTEFPDARVEIDNF 309 G N +P + R +P + ++A + K I + + LP +R E + Sbjct: 264 GTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVEIRRLLLARALR 323 Query: 310 AGSPALEAVEQAAITELVRALTGDR-QTRKVAYGTEAGLFQQIGIPTIVCGPGDI----G 364 + VE ++ R + G+ T A T+A L+ + GIP ++ G G Sbjct: 324 PLPGHEKLVE--SLLRNAREVMGETLTTNGSALYTDARLYGEQGIPVVLFGAGPRTLMES 381 Query: 365 NAHKPNEFVTLAQMERCEQFL 385 NA + +E + L + + + + Sbjct: 382 NAKQADENLALDDLRKATKVV 402 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,250,875 Number of extensions: 52935 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 4 Length of query: 395 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 308 Effective length of database: 1,207,925 Effective search space: 372040900 Effective search space used: 372040900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)