BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0040.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspiril...   529   e-151
gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspiril...   114   8e-27

>gi|300312086|ref|YP_003776178.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score =  529 bits (1362), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/268 (99%), Positives = 268/268 (100%)

Query: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60
           MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL
Sbjct: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60

Query: 61  GIHPLYVPTSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120
           GIHPLYVP+SQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA
Sbjct: 61  GIHPLYVPSSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120

Query: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVPGGIAHAFNGSDQQARTFVELGLHLGF 180
           EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVPGGIAHAFNGSDQQARTFVELGLHLGF
Sbjct: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVPGGIAHAFNGSDQQARTFVELGLHLGF 180

Query: 181 GGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQVLAELRG 240
           GGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQVLAELRG
Sbjct: 181 GGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQVLAELRG 240

Query: 241 LPQQEVAAATTANARAALPRLASSGLSF 268
           LPQQEVAAATTANARAALPRLASSGLSF
Sbjct: 241 LPQQEVAAATTANARAALPRLASSGLSF 268


>gi|300311908|ref|YP_003776000.1| Mg-dependent DNase [Herbaspirillum
           seropedicae SmR1]
          Length = 259

 Score =  114 bits (285), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 15/259 (5%)

Query: 1   MWVDTHCHLDAGEFGERSAILADEAAQAGVRVIVIPAIARANFARVGQLAREVGNAVYAL 60
           M++D+HCH++  +   R   +  + A+  V   +  ++   +F +V  LA +  +   ++
Sbjct: 1   MYIDSHCHINFPDLAARLPEIFGKMAENQVSHALCVSVDLPDFPQVLALAEQYPHVYASV 60

Query: 61  GIHPLYVPTSQESDLALLREAIAAALDDPLFVGIGEIGLDFFVPALKEPPLREKQEFFFA 120
           G+HP Y  T + S   L+R A     D P  V IGE GLD++         RE+    F 
Sbjct: 61  GVHPDYEDTPEPSVDELVRLA-----DHPRIVAIGETGLDYYRLQGDLEWQRER----FR 111

Query: 121 EQLKLARDFALPVLLHVRRSQDIILKHLRRIRVP------GGIAHAFNGSDQQARTFVEL 174
             ++ +R    P+++H R + +  ++ LR            G+ H F  S + A   +EL
Sbjct: 112 THIRASRATGKPLIIHTRAASEDTIRILREEGASPQAGGAAGVMHCFTESQEVADAAIEL 171

Query: 175 GLHLGFGGAMTFPRALQIRRLAAELPLSSIVLETDAPDIAPAWRHPEINTPDQIPRIGQV 234
           G ++ F G +TF  A  ++++A  +PL  +++ETD+P +AP     + N P  +  +G+ 
Sbjct: 172 GFYISFSGIVTFKSAKDLQQVARAIPLERMLIETDSPYLAPVPFRGKTNEPGYVRHVGEF 231

Query: 235 LAELRGLPQQEVAAATTAN 253
           +A+LRG    EVA  T+ N
Sbjct: 232 IADLRGTSAAEVARQTSEN 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,849
Number of extensions: 32934
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)