BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0033.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312079|ref|YP_003776171.1| nicotinamide mononucleotide tra...   372   e-104

>gi|300312079|ref|YP_003776171.1| nicotinamide mononucleotide
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  372 bits (955), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/192 (98%), Positives = 191/192 (99%)

Query: 12  LSTTPLELVSFALAVITVWLNIRQNHWAWLFSILSSVLYAAVFADARLYGDAGLQFVFVA 71
           +STTPLELVSFALAVITVWLNIRQNHWAWLFSILSSVLYAAVFADARLYGDAGLQFVFVA
Sbjct: 1   MSTTPLELVSFALAVITVWLNIRQNHWAWLFSILSSVLYAAVFADARLYGDAGLQFVFVA 60

Query: 72  VSVWGWYQWLRGGVAHQPLAVSRLQRGGWGLMLAAWLAGWWMLSWFLQRYTDTDVPHMDG 131
           VSVWGWYQWLRGGVAHQPLAVSRLQRGGWGLMLAAWLAGWW+LSWFLQRYTDTDVPHMDG
Sbjct: 61  VSVWGWYQWLRGGVAHQPLAVSRLQRGGWGLMLAAWLAGWWVLSWFLQRYTDTDVPHMDG 120

Query: 132 FLTAGSLVGQFLLSRKKIENWLVWIAVDVLYVGLYVYKHLSLTAMLYALFVLMAAAGWRC 191
           FLTAGSLVGQFLLSRKKIENWLVWIAVDVLYVGLYVYKHLSLTAMLYALFVLMAAAGWR 
Sbjct: 121 FLTAGSLVGQFLLSRKKIENWLVWIAVDVLYVGLYVYKHLSLTAMLYALFVLMAAAGWRS 180

Query: 192 WRRAAAQAGRPA 203
           WRRAAAQAGRPA
Sbjct: 181 WRRAAAQAGRPA 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.138    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,617
Number of extensions: 24909
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)