BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0027.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312073|ref|YP_003776165.1| outer membrane polysaccharide e...   410   e-116
gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide expo...    60   1e-10

>gi|300312073|ref|YP_003776165.1| outer membrane polysaccharide
           export protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  410 bits (1055), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MRPQLVRYASYILASTLLLAGCASRPVADTASVPAAPVNSEYRIGPGDNLNVIVWRNPEV 60
           MRPQLVRYASYILASTLLLAGCASRPVADTASVPAAPVNSEYRIGPGDNLNVIVWRNPEV
Sbjct: 1   MRPQLVRYASYILASTLLLAGCASRPVADTASVPAAPVNSEYRIGPGDNLNVIVWRNPEV 60

Query: 61  SLVVPVRPDGKFSTPLANDIEASGKTPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSD 120
           SLVVPVRPDGKFSTPLANDIEASGKTPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSD
Sbjct: 61  SLVVPVRPDGKFSTPLANDIEASGKTPKEVGAEIAKALSAYITDPVVTVVVTGFSGIYSD 120

Query: 121 QIRVIGQAAKPQALPYRKEMSLLDVVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDD 180
           QIRVIGQAAKPQALPYRKEMSLLDVVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDD
Sbjct: 121 QIRVIGQAAKPQALPYRKEMSLLDVVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDD 180

Query: 181 LMKDGDISANLAMRPGDILVIPESIF 206
           LMKDGDISANLAMRPGDILVIPESIF
Sbjct: 181 LMKDGDISANLAMRPGDILVIPESIF 206


>gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide export
           protein [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 10/174 (5%)

Query: 17  LLLAGCASRPVADTASVPAAPVNSEYRIGPGDNLNVIVWRNPEVSLVVPVRPDGKFSTPL 76
           L+LAG     +A + S  A  +     +GPGD + + V+ + +++L   +   G  S PL
Sbjct: 6   LMLAGLLVAVLAFSGSARAEDIP----LGPGDVIRINVYGSQDLTLETRISEAGVISYPL 61

Query: 77  ANDIEASGKTPKEVGAEIAKAL--SAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQAL 134
             +++  G +  +   +IA  L    Y+ +P V ++VT  +   S  I V+GQ  KP   
Sbjct: 62  IGEVKIGGMSTAQAERKIAGMLKQGGYLVNPQVNILVTAPA---SQMISVLGQVYKPGRY 118

Query: 135 PYRKEMSLLDVVIAVGGTTEFAAGNRASVIRLVDGKQTKIAVRLDDLMKDGDIS 188
           P     ++ DV IA+ G      G+  +++R  DGK T+ AV +  +  +GD +
Sbjct: 119 PLDGRRNVADV-IALAGGVNPDGGDTITIVRTEDGKVTRTAVDIYAITHNGDTT 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 671,723
Number of extensions: 28257
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)