BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0023.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312064|ref|YP_003776156.1| polysaccharide deacetylase [Her...   625   e-180

>gi|300312064|ref|YP_003776156.1| polysaccharide deacetylase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score =  625 bits (1612), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/316 (99%), Positives = 313/316 (99%), Gaps = 3/316 (0%)

Query: 41  CILTYHRVLAQPDPLLGGEIDLASFRWQMQLLAKGFTVLPLAEALQRLRQNRLPPRAVSI 100
           CILTYHRVLAQPDPLLGGEIDLASFRWQMQLLAKGFTVLPLAEALQRLRQNRLPPRAVSI
Sbjct: 41  CILTYHRVLAQPDPLLGGEIDLASFRWQMQLLAKGFTVLPLAEALQRLRQNRLPPRAVSI 100

Query: 101 TFDDGYRSVHTLALPVLQQLGLPATVFATTGFVEHGSMWNDRILHAVRRLPADAHDWQAL 160
           TFDDGYRSVHTLALPVLQQLGLPATVFATTGFVEHGSMWNDRILHAVRRLPADAHDWQAL
Sbjct: 101 TFDDGYRSVHTLALPVLQQLGLPATVFATTGFVEHGSMWNDRILHAVRRLPADAHDWQAL 160

Query: 161 GLPQELLPSAPDLRHDPDARTHLATLLDAHVKYLAPAERQRVIETLERHAGPVGQAEQAD 220
           GLPQELLPSAPDLRHDPDARTHLATLLDAHVKYLAPAERQRVIETLERHAGPVG   QAD
Sbjct: 161 GLPQELLPSAPDLRHDPDARTHLATLLDAHVKYLAPAERQRVIETLERHAGPVG---QAD 217

Query: 221 QANQADQDLMLDHDMLLALAQAGVEIGGHTTSHPILSRLDDAQARHEICDNKAALEAILG 280
           QANQADQDLMLDHDMLLALAQAGVEIGGHTTSHPILSRLDDAQARHEICDNKAALEAILG
Sbjct: 218 QANQADQDLMLDHDMLLALAQAGVEIGGHTTSHPILSRLDDAQARHEICDNKAALEAILG 277

Query: 281 RRLRLFAYPNGKPGLDYDQRHVAMVRGAGYEAAFTTAGGSAGPEHDCYQIPRGRPWDRRP 340
           RRLRLFAYPNGKPGLDYDQRHVAMVRGAGYEAAFTTAGGSAGPEHDCYQIPRGRPWDRRP
Sbjct: 278 RRLRLFAYPNGKPGLDYDQRHVAMVRGAGYEAAFTTAGGSAGPEHDCYQIPRGRPWDRRP 337

Query: 341 LMFGLRLLRWLARPGA 356
           LMFGLRLLRWLARPGA
Sbjct: 338 LMFGLRLLRWLARPGA 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,063,639
Number of extensions: 43919
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)