BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0020.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312062|ref|YP_003776154.1| membrane-anchored group 1 glyco...   493   e-141
gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein [...    89   4e-19

>gi|300312062|ref|YP_003776154.1| membrane-anchored group 1
           glycosyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  493 bits (1268), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/249 (99%), Positives = 249/249 (100%)

Query: 1   LKRADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDFSLGQQADPALARQLGLEGKT 60
           LKRADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDFSLGQQADPALARQLGLEGKT
Sbjct: 158 LKRADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDFSLGQQADPALARQLGLEGKT 217

Query: 61  LLGFIGSFYAYEGLPVLVRALPQLLAGNPDVRLLLVGGGPQERALHALAAELGVSDKVVF 120
           LLGFIGSFYAYEGLPVLV+ALPQLLAGNPDVRLLLVGGGPQERALHALAAELGVSDKVVF
Sbjct: 218 LLGFIGSFYAYEGLPVLVQALPQLLAGNPDVRLLLVGGGPQERALHALAAELGVSDKVVF 277

Query: 121 AGRVPHEQVQRYYNLIDVLVYPRLKMRLTDLVTPLKPLEAMAQGRLVVASDVGGHRELIS 180
           AGRVPHEQVQRYYNLIDVLVYPRLKMRLTDLVTPLKPLEAMAQGRLVVASDVGGHRELIS
Sbjct: 278 AGRVPHEQVQRYYNLIDVLVYPRLKMRLTDLVTPLKPLEAMAQGRLVVASDVGGHRELIS 337

Query: 181 DGRTGVLFAAGSPEALAQKVLALLAEPARWPQLRAAGRHFVETERNWAASVARYQQIYPR 240
           DGRTGVLFAAGSPEALAQKVLALLAEPARWPQLRAAGRHFVETERNWAASVARYQQIYPR
Sbjct: 338 DGRTGVLFAAGSPEALAQKVLALLAEPARWPQLRAAGRHFVETERNWAASVARYQQIYPR 397

Query: 241 LVAASAGIQ 249
           LVAASAGIQ
Sbjct: 398 LVAASAGIQ 406


>gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 12/186 (6%)

Query: 3   RADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDFSLGQQADPALARQLGLEGKTLL 62
           +A  + T+C  LR ++   G    K+  + N V++  F   ++   A+ R+L + G TLL
Sbjct: 165 QAAGIITVCNALRDELIVLGADPDKVVALRNGVDLQLFRPLERE--AVRRELEITGFTLL 222

Query: 63  GFIGSFYAYEGLPVLVRALPQLLAGNPDVRLLLVGGGPQERALHALAAELGVSDKVVFAG 122
             +G+    +G  + + ALP+L    P+ RLL+ G GP++  L ALAA+LGV ++V F G
Sbjct: 223 S-VGNLAPVKGHDLTIAALPRL----PEARLLIAGSGPEQARLEALAAQLGVRERVRFLG 277

Query: 123 RVPHEQVQRYYNLIDVLVYPRLKMRLTDLVTPLKPLEAMAQGRLVVASDVGGHRELISDG 182
            +P   + RYYN  D++V    +    +++     LE+MA G  VVAS V G  E+++  
Sbjct: 278 ALPQSALCRYYNAADMMVLASAREGWANVL-----LESMACGTPVVASKVWGTPEVVAHP 332

Query: 183 RTGVLF 188
             G+L 
Sbjct: 333 DAGLLM 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 850,863
Number of extensions: 39458
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 4
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)