BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0014.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312039|ref|YP_003776131.1| trypsin family periplasmic seri...   478   e-136
gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine...    59   3e-10

>gi|300312039|ref|YP_003776131.1| trypsin family periplasmic serine
           protease [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  478 bits (1229), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 17  GAGRAGAADLVQTIAAIKPAIVGVGSYQAMRSPAVSFVGTGFVVGDGLTVVTNAHVVAAA 76
           GAGRAGAADLVQTIAAIKPAIVGVGSYQAMRSPAVSFVGTGFVVGDGLTVVTNAHVVAAA
Sbjct: 17  GAGRAGAADLVQTIAAIKPAIVGVGSYQAMRSPAVSFVGTGFVVGDGLTVVTNAHVVAAA 76

Query: 77  SGEERKDSKDNLRVLVARGANVEAREAALLVMDRLHDLALLRLSGAPEPALRVGDSDSAR 136
           SGEERKDSKDNLRVLVARGANVEAREAALLVMDRLHDLALLRLSGAPEPALRVGDSDSAR
Sbjct: 77  SGEERKDSKDNLRVLVARGANVEAREAALLVMDRLHDLALLRLSGAPEPALRVGDSDSAR 136

Query: 137 EGQMLAFTGFPLTAILGFHPVTHRAMISAITVVATPAPNARSLDAKAIVQLQRSAYPVFQ 196
           EGQMLAFTGFPLTAILGFHPVTHRAMISAITVVATPAPNARSLDAKAIVQLQRSAYPVFQ
Sbjct: 137 EGQMLAFTGFPLTAILGFHPVTHRAMISAITVVATPAPNARSLDAKAIVQLQRSAYPVFQ 196

Query: 197 LDGTAYPGFSGSPLYDPESGVVLGVINKVLNATKESAISAPSGITYAIPAKFVQQLMTGR 256
           LDGTAYPGFSGSPLYDPESGVVLGVINKVLNATKESAISAPSGITYAIPAKFVQQLMTGR
Sbjct: 197 LDGTAYPGFSGSPLYDPESGVVLGVINKVLNATKESAISAPSGITYAIPAKFVQQLMTGR 256


>gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine
           endoprotease [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 44/206 (21%)

Query: 54  VGTGFVVG-DGLTVVTNAHVVAAASGEERKDSKDNLRVLVARGANVEAREAALLVMDRLH 112
           +G+GF++  DGL ++TNAHVV            D  + +V +  +    +A +L +D+  
Sbjct: 125 LGSGFIISPDGL-ILTNAHVV------------DGAQEVVVKLTDRREFKAKVLGIDKQS 171

Query: 113 DLALLRLSGAPEPALRVGDSDSAREGQMLAFTGFPLTAILGFHPVTHRAMISAITVVATP 172
           D+A++R+     P +++GD    + GQ +   G P     GF       +ISA       
Sbjct: 172 DIAVIRIDAKNLPTVQIGDPSRVKVGQPVLAIGSP----YGFDNTATAGIISA------- 220

Query: 173 APNARSLDAKAIVQLQRSAYPVFQLDGTAYPGFSGSPLYDPESGVVLGVINKVLNATKES 232
              +RSL     V       P  Q D    PG SG PL+D  +G V+G+ +++ + T   
Sbjct: 221 --KSRSLPDDNYV-------PFIQTDVAVNPGNSGGPLFD-LNGQVIGINSQIYSQT--- 267

Query: 233 AISAPSGITYAIP----AKFVQQLMT 254
                 G++++IP     K  QQL+T
Sbjct: 268 --GGFQGLSFSIPIDVAMKVEQQLVT 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 713,909
Number of extensions: 29353
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)