BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0013.p (616 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 929 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 559 e-160 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 559 e-160 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 519 e-148 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 518 e-148 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/484 (96%), Positives = 480/484 (99%) Query: 17 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLSRLQ 76 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTL+RLQ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 77 LAMSRLRSFEMQHILAKDAQEYEEVERSMQAQLSSIKNAQTEYLTQISEPEEKAIYPEVE 136 LAMSRLRSFE+QHILAKDA+EYEEVER MQ Q++++K AQ EY+TQISEPEEKAIYPEVE Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 137 KLIATFVSEHDKIIALSRQGKDEEARNLQRGDSTKAYRTALQQIDKLAAVNNKGADVSNK 196 KLIATFVSEHDKIIALSRQGKDEEARNLQRG+STKAYRT+LQQIDKLAAVN+KGAD+SNK Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 197 QADSIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 256 QAD+IYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 257 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 316 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 317 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 376 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 377 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 436 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 437 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASREQSEGIEQVNLAIAQMDEV 496 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSAS+EQSEGIEQVNLAIAQMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 497 TQQN 500 TQQN Sbjct: 481 TQQN 484 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 559 bits (1441), Expect = e-160, Method: Compositional matrix adjust. Identities = 294/485 (60%), Positives = 373/485 (76%), Gaps = 2/485 (0%) Query: 17 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLSRLQ 76 M WF +L+I++KLI +F V+ + LG+F+IR+L VN AST+++TNWLP+I+ +Q Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 77 LAMSRLRSFEMQHILAKDAQEYEEVERSMQAQLSSIKNAQTEYLTQISEPEEKAIYPEVE 136 ++ R+R E+Q + A E E+ ++++++L + + Y QISE EEK +Y + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 137 KLIATFVSEHDKIIA-LSRQGKDEEARNLQRGDSTKAYRTALQQIDKLAAVNNKGADVSN 195 K AT++ E DK +A +S +GK+EEAR L +GDS K +R+ ++ +D++ VN+ G+ S+ Sbjct: 121 KSFATYL-EIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSD 179 Query: 196 KQADSIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 255 A+ +Y A LWII +AA + +A+ LAV V+R ++RPL EAV+VA+RVA GDLT I Sbjct: 180 DMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIR 239 Query: 256 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 315 DETG L+ +L++MNDSL IVG+VR GT TITTAS EIA+GNLDLSSRTEEQA SL Sbjct: 240 ATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSL 299 Query: 316 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 375 EETASAMEELT+TVKQNADNARQANQLA SAS++A+QGGAVV QVV TM I SS +IA Sbjct: 300 EETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIA 359 Query: 376 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 435 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LI+ Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 419 Query: 436 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASREQSEGIEQVNLAIAQMDE 495 SV +V GS+LVERAG TMSEVV SVRRVTD+V EIS+AS EQS GIE++N AI QMDE Sbjct: 420 DSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDE 479 Query: 496 VTQQN 500 VTQQN Sbjct: 480 VTQQN 484 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 559 bits (1440), Expect = e-160, Method: Compositional matrix adjust. Identities = 289/484 (59%), Positives = 362/484 (74%) Query: 17 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLSRLQ 76 M WFY+L+I+ KL FLVV+ + LG FS +L VN +ST+I+ NWLPSI LS++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 77 LAMSRLRSFEMQHILAKDAQEYEEVERSMQAQLSSIKNAQTEYLTQISEPEEKAIYPEVE 136 LA++R RSF+MQ +L D QE + Q++++ Y +SEP EK +YPE+E Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 137 KLIATFVSEHDKIIALSRQGKDEEARNLQRGDSTKAYRTALQQIDKLAAVNNKGADVSNK 196 + IA + H+++ AL Q + + A L ST YR +QI +L+ VN+KGA +S+ Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 197 QADSIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 256 AD IY QA + I+ V C+ LAM L+ W++RL+ARPL AV +A++VA GDLT I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 257 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 316 A +DETGQLL AL+ MN +L+ IV +VR GT TITTAS EIA+GN+DLSSRTE+QA +LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 317 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 376 ETASAMEELTSTV+QN+DNARQANQLAV+ASEVA GG VV +VV TM +IN SSRKI D Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 377 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 436 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 437 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASREQSEGIEQVNLAIAQMDEV 496 SVA+VD GSKLV+ AG TM+EVV SV+RV+DIV EI++A EQ++GIEQ+N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 497 TQQN 500 TQQN Sbjct: 481 TQQN 484 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 519 bits (1337), Expect = e-148, Method: Compositional matrix adjust. Identities = 275/484 (56%), Positives = 359/484 (74%) Query: 17 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLSRLQ 76 M WFY+L I++KL +F VV+A+ G+F+I++L QVN AS EI + W+P++ LQ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 77 LAMSRLRSFEMQHILAKDAQEYEEVERSMQAQLSSIKNAQTEYLTQISEPEEKAIYPEVE 136 ++ LR E++ + A QE ++++ +L ++ + + ++SEP+EK Y + Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 137 KLIATFVSEHDKIIALSRQGKDEEARNLQRGDSTKAYRTALQQIDKLAAVNNKGADVSNK 196 K + +V +++ ++ + +E R L GDS K YR+ + +D + +N G+ +++ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 197 QADSIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 256 +A +++ A+ WI+ +AA + +A LLA V+ ++RPL+EAV +AQRVA GDLT RI P Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 257 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 316 AG+DETG L+ AL++MN+SL IV +VR GT TITTAS EIA GNLDLS+RTE+QA SLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 317 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 376 ETASAMEELTSTV QNADNARQANQLA +AS++ASQGG VV QVV TM I SSR+IAD Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 377 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 436 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI+ Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 437 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASREQSEGIEQVNLAIAQMDEV 496 SV +V GS LVERAG TM+EVV SVRRVTD+V EIS+A++EQS GI +VNLAI QMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 497 TQQN 500 TQQN Sbjct: 481 TQQN 484 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 518 bits (1333), Expect = e-148, Method: Compositional matrix adjust. Identities = 282/487 (57%), Positives = 361/487 (74%), Gaps = 1/487 (0%) Query: 17 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLSRLQ 76 M WFY+ RI+ KL+ F V+ + LG+FSI QL +VN A+TE++TNWLPSIR+L+ ++ Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 77 LAMSRLRSFEMQHILAK-DAQEYEEVERSMQAQLSSIKNAQTEYLTQISEPEEKAIYPEV 135 +A+SR+R+ + Q L D ++ V M L ++ A+ +Y QISEP EKA++P V Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 136 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGDSTKAYRTALQQIDKLAAVNNKGADVSN 195 I F++ H +A R GK +EA+ L G + + Y + L +DKLA VN G+ S Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 196 KQADSIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 255 + A++ Y QA++W++ + + + LA++++R+IA PL A A +A GDLT I Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 256 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 315 DETGQL AL +MN SL IV QVR GT I TAS +I+SGNLDLSSRTEEQASSL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 316 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 375 EETASAMEELTSTV+QNA+NARQANQLA+SAS +A +GG VV+QV++TMGSI+ASS+KI Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 376 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 435 DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI+ Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 436 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASREQSEGIEQVNLAIAQMDE 495 SV QV +GS LV++AG+T+SEVV SV+RVTD++ EIS+AS EQ++GIEQVN AI QMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 496 VTQQNAA 502 VTQQNAA Sbjct: 481 VTQQNAA 487 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,505,334 Number of extensions: 54426 Number of successful extensions: 647 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 481 Number of HSP's successfully gapped: 71 Length of query: 616 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 525 Effective length of database: 1,188,985 Effective search space: 624217125 Effective search space used: 624217125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 133 (55.8 bits)