BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0012.p (133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 270 2e-74 gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 92 1e-20 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 80 4e-17 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 77 6e-16 gi|300311884|ref|YP_003775976.1| two component response regulato... 76 7e-16 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 270 bits (691), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL Sbjct: 8 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 67 Query: 61 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 120 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV Sbjct: 68 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 127 Query: 121 SQTVRRWLPGATP 133 SQTVRRWLPGATP Sbjct: 128 SQTVRRWLPGATP 140 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 92.0 bits (227), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 M+DPSPE+ ELARF LWR L CAF +D A + L + + R+ P LILLE + Sbjct: 20 MIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGR-RSGDCATPSLILLESDM 78 Query: 61 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 120 +GLELL LRA +H PVV+F S D A AGA YL KP+D + V Sbjct: 79 ECGDGLELLRELRASSHLAEAPVVVF-PSHDTEGEREALDAGATAYLPKPIDGERYARCV 137 Query: 121 SQTVRRW 127 + V RW Sbjct: 138 VEMVERW 144 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 80.5 bits (197), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 1/125 (0%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 M++ + E+VELARF LWR+ C W+++A+ A L + + R A LP LILL+P + Sbjct: 8 MIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLH-RHRLDDARLPDLILLDPGM 66 Query: 61 PRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMELV 120 G++ + ++A TR++PVV+F S + AGA+ YL+KP A +M+ V Sbjct: 67 MENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYMQAV 126 Query: 121 SQTVR 125 + + Sbjct: 127 VECAQ 131 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 76.6 bits (187), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 3/129 (2%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLEPRL 60 ++D +++E ARF LWR+ L C WF+DAE A SL QA D P LILL+PR Sbjct: 12 IIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLT-QALCQLRDQPTLILLDPRN 70 Query: 61 PR-MEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMEL 119 R EG ELL L + +P+V+F S +D A A Y KP +MEL Sbjct: 71 FRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFA-AEQDNRIWYAAKPARPADYMEL 129 Query: 120 VSQTVRRWL 128 V++ V++ L Sbjct: 130 VTRCVQQRL 138 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 76.3 bits (186), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 2/128 (1%) Query: 1 MVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADL-PCLILLEPR 59 +VD SPE EL R L KL WF DAE A + F + A DL P LILL+ Sbjct: 10 LVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEY-AQRRDLHPYLILLDLN 68 Query: 60 LPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFMEL 119 LP M G + L +++++A T +PVVMF++S D D ++ GAN Y+VK D + FM Sbjct: 69 LPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMGT 128 Query: 120 VSQTVRRW 127 V T W Sbjct: 129 VVDTGIYW 136 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 392,258 Number of extensions: 12806 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 9 Length of query: 133 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 58 Effective length of database: 1,264,745 Effective search space: 73355210 Effective search space used: 73355210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)