BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0004.p
         (361 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   662   0.0  
gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   281   4e-77

>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/335 (99%), Positives = 334/335 (99%)

Query: 1   MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 60
           MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV
Sbjct: 1   MARPRFLPDNMTLLLLAVVVTASLLPCTGQVAEVFDGLTTFMIGLLFFMHGAKLSREAVV 60

Query: 61  AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 120
           AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT
Sbjct: 61  AGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPELYLGLLFLCVLPSTVQSSIAFT 120

Query: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDGAGHSSLDSILKIVYQLLLPFVA 180
           SVARGNVPAAICAASASNLLGIFLTPLLVG LVVAH+GAGHSSLDSILKIVYQLLLPFVA
Sbjct: 121 SVARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVA 180

Query: 181 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240
           GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA
Sbjct: 181 GQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINA 240

Query: 241 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300
           VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM
Sbjct: 241 VLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVM 300

Query: 301 LFHQLQLMVCAVLAARYGARQEEVEAAVASESGGD 335
           LFHQLQLMVCAVLAARYGARQEEVEAAVASESGGD
Sbjct: 301 LFHQLQLMVCAVLAARYGARQEEVEAAVASESGGD 335


>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  281 bits (720), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/293 (56%), Positives = 212/293 (72%), Gaps = 2/293 (0%)

Query: 39  TTFMIGLLFFMHGAKLSREAVVAGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPE 98
           +   I LLFF+HGAKLSREA +AG    +LH+  L  TF LFPL+GL  K +    +TP+
Sbjct: 5   SNVAISLLFFLHGAKLSREAALAGLKQPRLHLLTLGSTFLLFPLLGLGLKAVAPDLLTPQ 64

Query: 99  LYLGLLFLCVLPSTVQSSIAFTSVARGNVPAAICAASASNLLGIFLTPLLVGVLVVAHDG 158
           L++G+LF+C L STVQSSI FTS+ARGNVPAAIC A+ASNLLGI +TPLLV +L+  H  
Sbjct: 65  LWMGVLFVCTLSSTVQSSIGFTSIARGNVPAAICGATASNLLGILVTPLLVTLLLHRHHE 124

Query: 159 AGHSSLDSILKIVYQLLLPFVAGQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEA 218
           A  + L  +L I+ QLLLPFV G + RPWIG WI R+K  +  VD+  ILL VY AFS A
Sbjct: 125 A--NGLSQVLSILLQLLLPFVLGNLLRPWIGDWINRHKVIVNVVDRGGILLSVYAAFSAA 182

Query: 219 VVQGLWHQVPMSMLVALLVINAVLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLAS 278
           V QG+WH  P   L  L+++NA+LL  ++ +TTYG+R L   + DEI +VFCGSKKSLAS
Sbjct: 183 VAQGIWHLFPPGQLALLVLVNAMLLGAVLLITTYGARALKMPRGDEIVLVFCGSKKSLAS 242

Query: 279 GVPMAKVLFSSGAIGMVLLPVMLFHQLQLMVCAVLAARYGARQEEVEAAVASE 331
           G+P+A VLF+     +VLLP+MLFHQ+QLM+CAVLA RY A+Q+ ++A  AS 
Sbjct: 243 GIPIASVLFAGSGAAVVLLPIMLFHQMQLMLCAVLARRYAAQQDHLDADDASS 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,039,669
Number of extensions: 39500
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,212,660
Effective search space: 333481500
Effective search space used: 333481500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)