BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0001.p (106 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312026|ref|YP_003776118.1| signal transduction protein con... 211 7e-57 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 108 1e-25 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 107 2e-25 gi|300311453|ref|YP_003775545.1| signal transduction containing ... 97 3e-22 gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014... 94 2e-21 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 211 bits (538), Expect = 7e-57, Method: Composition-based stats. Identities = 102/105 (97%), Positives = 103/105 (98%) Query: 2 SSYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK 61 + YSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK Sbjct: 1002 TGYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK 1061 Query: 62 QLQALREFGSDEYQGYYFSKPVPYAQFVQLLAGQQDMPQGLARQG 106 QLQALREFGSDEYQGYYFSKPVPYAQFVQLLAGQQD PQGLARQG Sbjct: 1062 QLQALREFGSDEYQGYYFSKPVPYAQFVQLLAGQQDRPQGLARQG 1106 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 108 bits (270), Expect = 1e-25, Method: Composition-based stats. Identities = 53/102 (51%), Positives = 73/102 (71%) Query: 2 SSYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK 61 + YSSL+YL+RFPV+ LKIDKSF+ DI + +S+AIV+AII+++H LNL+V+ EGVE E+ Sbjct: 598 TGYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEE 657 Query: 62 QLQALREFGSDEYQGYYFSKPVPYAQFVQLLAGQQDMPQGLA 103 Q L+E DE QGYYF KP+ A F ++ Q Q L+ Sbjct: 658 QHAFLKENACDEVQGYYFGKPMEVAVFTAWMSEQAQAGQVLS 699 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 107 bits (267), Expect = 2e-25, Method: Composition-based stats. Identities = 49/91 (53%), Positives = 68/91 (74%) Query: 2 SSYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK 61 + YSSLAYLKRFP++ LKID+SF+ DI + + +AI +II+++ L L+V+ EGVET++ Sbjct: 851 TGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDE 910 Query: 62 QLQALREFGSDEYQGYYFSKPVPYAQFVQLL 92 QL LR +G DE QGY FS PVP +F Q+L Sbjct: 911 QLDYLRHYGCDEIQGYLFSPPVPADKFEQIL 941 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 97.1 bits (240), Expect = 3e-22, Method: Composition-based stats. Identities = 54/96 (56%), Positives = 66/96 (68%), Gaps = 1/96 (1%) Query: 2 SSYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK 61 + YSSL+YLKRFP+NTLKID+SF IPD+ N AI AII ++ L KV+ EGVE EK Sbjct: 577 TGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVEDEK 636 Query: 62 QLQALREFGSDEYQGYYFSKPVPYAQF-VQLLAGQQ 96 Q LRE G +E QGY FS+PVP F LL G++ Sbjct: 637 QFNFLREAGCNELQGYIFSRPVPAPDFHAMLLEGRK 672 >gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspirillum seropedicae SmR1] Length = 726 Score = 94.0 bits (232), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 65/91 (71%) Query: 2 SSYSSLAYLKRFPVNTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEK 61 + YSSL+YL RFP++ +KID++F+ ++ ++ ++I+++II + +LNL ++ EGVETE+ Sbjct: 629 TGYSSLSYLGRFPIDQIKIDQTFVREMQNDAAMASIIRSIIMLGQSLNLSIIAEGVETEQ 688 Query: 62 QLQALREFGSDEYQGYYFSKPVPYAQFVQLL 92 Q L G YQGY++SKP+P QF LL Sbjct: 689 QRDFLHAQGCLLYQGYWYSKPIPGEQFADLL 719 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 291,009 Number of extensions: 9414 Number of successful extensions: 51 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 17 Length of query: 106 Length of database: 1,619,870 Length adjustment: 72 Effective length of query: 34 Effective length of database: 1,278,950 Effective search space: 43484300 Effective search space used: 43484300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)