BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0059.p
         (668 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309421|ref|YP_003773513.1| transmembrane protein [Herbaspi...  1278   0.0  

>gi|300309421|ref|YP_003773513.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 668

 Score = 1278 bits (3308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/668 (99%), Positives = 668/668 (100%)

Query: 1   MQNDNQAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFA 60
           MQNDNQAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFA
Sbjct: 1   MQNDNQAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFA 60

Query: 61  NANILENNMVQTQASAAGTLSSVIFILPGLLMMGHWQGFPFLQTLGICAAGGMLGVMFSI 120
           NANILENNMVQTQASAAGTLSSVIFILPGLLMMGHWQGFPFLQTLGICAAGGMLGVMFSI
Sbjct: 61  NANILENNMVQTQASAAGTLSSVIFILPGLLMMGHWQGFPFLQTLGICAAGGMLGVMFSI 120

Query: 121 PLRRVMVVQGELPYPEGVAAAEILRVGSADADGGEESRRGLRDILFGGALAAGFSVAASG 180
           PLRRVMVVQGELPYPEGVAAAEILRVGSADADGGEESRRGLRDILFGGALAAGFSVAASG
Sbjct: 121 PLRRVMVVQGELPYPEGVAAAEILRVGSADADGGEESRRGLRDILFGGALAAGFSVAASG 180

Query: 181 LKVFAESMSLWFAAGASAVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT 240
           LKVFAESMSLWFAAGASAVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT
Sbjct: 181 LKVFAESMSLWFAAGASAVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT 240

Query: 241 AVTPHAADVSLADFANGLWKSQVRFIGAGMIGVAAIWTLATLFGPMVQGVKASLSTLARR 300
           AVTPHAADVSLADFANGLWKSQVRFIGAGMIGVAAIWTLATLFGPMVQGVKASLSTLARR
Sbjct: 241 AVTPHAADVSLADFANGLWKSQVRFIGAGMIGVAAIWTLATLFGPMVQGVKASLSTLARR 300

Query: 301 QQGSTERTDQDMSPRWIVIISLAMIGLLAVVFASFLAGAPVSPALFAGLVVYAVVFAFVF 360
           QQGSTERTDQDMSPRWIVIISLAMIGLLAVVFASFLAGAPVSPALFAGLVVYAVVFAFVF
Sbjct: 301 QQGSTERTDQDMSPRWIVIISLAMIGLLAVVFASFLAGAPVSPALFAGLVVYAVVFAFVF 360

Query: 361 GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSLLLLASGMVDTLLATPEGGKLAIAIA 420
           GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSLLLLASGMVDTLLATPEGGKLAIAIA
Sbjct: 361 GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSLLLLASGMVDTLLATPEGGKLAIAIA 420

Query: 421 LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGALVIPPVLTLLYNAY 480
           LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGALVIPPVLTLLYNAY
Sbjct: 421 LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGALVIPPVLTLLYNAY 480

Query: 481 GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLTVGVGLGILLIVIDWLLA 540
           GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLTVGVGLGILLIVIDWLLA
Sbjct: 481 GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLTVGVGLGILLIVIDWLLA 540

Query: 541 RRGGVARLPVLAVGIGIYLPPVVSSALFVGALLGWFIERALRRRALAAGADVEAYADKPR 600
           RRGGVARLPVLAVGIGIYLPPVVSSALFVGALLGWFIERALRRRALAAGA+VEAYADKPR
Sbjct: 541 RRGGVARLPVLAVGIGIYLPPVVSSALFVGALLGWFIERALRRRALAAGANVEAYADKPR 600

Query: 601 QRGVLVASGLIVGESLVGVVLAGVIGFTGKDAPLALVSGSFESIGQWLGLAAFALILLAF 660
           QRG+LVASGLIVGESLVGVVLAGVIGFTGKDAPLALVSGSFESIGQWLGLAAFALILLAF
Sbjct: 601 QRGILVASGLIVGESLVGVVLAGVIGFTGKDAPLALVSGSFESIGQWLGLAAFALILLAF 660

Query: 661 ARRIMPAR 668
           ARRIMPAR
Sbjct: 661 ARRIMPAR 668


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,766,031
Number of extensions: 72413
Number of successful extensions: 472
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 576
Effective length of database: 1,184,250
Effective search space: 682128000
Effective search space used: 682128000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)