BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0052.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309415|ref|YP_003773507.1| two component response regulato... 506 e-145 gi|300313791|ref|YP_003777883.1| response regulator protein [Her... 75 4e-15 gi|300313916|ref|YP_003778008.1| two component response regulato... 73 3e-14 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 65 5e-12 gi|300312077|ref|YP_003776169.1| response regulator containing a... 63 2e-11 >gi|300309415|ref|YP_003773507.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 506 bits (1303), Expect = e-145, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV Sbjct: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE Sbjct: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 Query: 241 PGKLARKNH 249 PGKLARKNH Sbjct: 241 PGKLARKNH 249 >gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%) Query: 3 NILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDGVT 62 + VVDD+ +R L +L G+ +A + + R VP +LLD+ MP +DG Sbjct: 4 TVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFE 63 Query: 63 LLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGL 118 +++ +R G +PVI +SG+ TI T V+A + GA FL KPI ++LL AV++ L Sbjct: 64 VVRRLERRGD-AIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEAL 118 >gi|300313916|ref|YP_003778008.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA IL+VDD+ R L+E + D GH V A + +L A D ++D+ MPD DG Sbjct: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIVDLRMPDEDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGL 118 + L+ + + +P IM++ +A+ D +EA R+GA + L KP+ L++ +++ L Sbjct: 61 LAFLQ--RAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL 116 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 65.1 bits (157), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 + +IL+V+DE I ELL + G T A + QAR+ +P +VLLD +PD+ G Sbjct: 5 LPHILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSG 64 Query: 61 VTLLKEWQRDG-LLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQ 115 + LL E +RD ++PVIM++ + V+ GA +++ KP + ++L+ VQ Sbjct: 65 LVLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ 120 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 4/128 (3%) Query: 3 NILVVDDEMGIRELLSEILGDEGHVVT--TAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 +L+ DD +RE L +I ++ A N +A +L + G D++LLDI +PD +G Sbjct: 10 KVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRNG 69 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 + +LK+ +++ +PV+++S H A+ A + GA FL K A +LL A++Q S Sbjct: 70 IDILKQIRKEQ-PELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAAS- 127 Query: 121 SREAVRPA 128 R+ V P+ Sbjct: 128 GRKYVSPS 135 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 741,495 Number of extensions: 28789 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 31 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)