BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0039.p (290 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 585 e-168 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 336 1e-93 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 204 1e-53 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 194 5e-51 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 171 6e-44 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 585 bits (1507), Expect = e-168, Method: Compositional matrix adjust. Identities = 288/290 (99%), Positives = 289/290 (99%) Query: 1 MHVSTHEIASLAAQELPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSG 60 MHVSTHEI SLAAQ+LPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSG Sbjct: 1 MHVSTHEITSLAAQDLPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSG 60 Query: 61 CGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLL 120 CGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLL Sbjct: 61 CGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLL 120 Query: 121 ASRTLGKRDAAERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEP 180 ASRTLGKRDAAERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEP Sbjct: 121 ASRTLGKRDAAERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEP 180 Query: 181 FAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 FAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS Sbjct: 181 FAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 Query: 241 HQYDLSSLGGVGFQQTAQRIHRLLFDEGGPSDAASAAAPTLNFSDVRFSY 290 HQYDLSSLGGVGFQQTAQRIHRLLFDEGGPSDAASAAAPTLNFSDVRFSY Sbjct: 241 HQYDLSSLGGVGFQQTAQRIHRLLFDEGGPSDAASAAAPTLNFSDVRFSY 290 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 336 bits (861), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 160/247 (64%), Positives = 200/247 (80%), Gaps = 2/247 (0%) Query: 19 PLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 PLL++DRV+LQY++ ++V AT VSF+V+P DR++LLGPSGCGKS+LLK++ G+L P + Sbjct: 16 PLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 Query: 79 GEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHYL 138 G IRL G+ +H+PGPDR++VFQEFDQL PWKTV QNV F L AS L R AAERA +Y+ Sbjct: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAEYYI 135 Query: 139 DKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 KVGLA+F D+YPH LSGGMK RV+IAR +AM+P +LLMDEPFAALDALTRRKMQ+ELL Sbjct: 136 SKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 Query: 199 LWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLSSLGGVGFQQTAQ 258 LWD+ +FT+LFVTHSIEEA+ VG RILLL+PHPG+VRAE+NS D S LG + Sbjct: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNS--IDPSQLGTAAQAELET 253 Query: 259 RIHRLLF 265 RI+ +LF Sbjct: 254 RINDMLF 260 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 149/221 (67%), Gaps = 2/221 (0%) Query: 18 APLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPA 77 +P +++ V +++ V A +++ D+ LLGPSGCGKS+LL ++AGF P+ Sbjct: 7 SPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPS 66 Query: 78 AGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHY 137 +G+I D +V+ +PGPDR +VFQE+ L PW TV QNV F L T K + +R Sbjct: 67 SGQILTDDKVVSEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGT-PKAEIHQRVTQL 124 Query: 138 LDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELL 197 LDK+GL F +P LSGGM+ RVAIAR LA+ ++LMDEPF ALDALTRR +Q+ELL Sbjct: 125 LDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELL 184 Query: 198 ALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEI 238 +WDE R T++FVTHSIEEA+ + +RI++++ PG V+ ++ Sbjct: 185 RIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 194 bits (494), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 106/222 (47%), Positives = 143/222 (64%), Gaps = 3/222 (1%) Query: 20 LLQVDRVSLQYRSATAV-VQATHEVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPAA 78 +L+V+ S+ + V A VS D+ V LG SGCGKS+LL ++AGFLP + Sbjct: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 Query: 79 GEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHYL 138 G I LDGQ + PG +R VVFQ+ D L PWK+V NV L + + K D+ ERA+ L Sbjct: 61 GRISLDGQPVSGPGAERGVVFQK-DSLLPWKSVQDNVALGLKFA-GVSKSDSRERAQELL 118 Query: 139 DKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLA 198 VGL FA A P+ LSGGM+ RV +ARALA PK+LLMDEPF ALD++TR +MQE L++ Sbjct: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVS 178 Query: 199 LWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINS 240 +W + F+THSIEEAL +G ++++SP PGR+ A + Sbjct: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 42 EVSFDVYPADRFVLLGPSGCGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQE 101 E + ++ + L+GPSGCGKS+LL AG P++G + DGQ + P P+R ++FQE Sbjct: 20 EFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMFQE 79 Query: 102 FDQLPPWKTVLQNVMFPLLASRTLGKRDAAERARHYLDKVGLARFADAYPHTLSGGMKAR 161 + L PW T+ QNV L +++ K+ AAE+AR +L+ V L F YPH +SGGM+ R Sbjct: 80 -NALYPWLTLQQNVALAL-EFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQR 137 Query: 162 VAIARALAMQPKMLLMDEPFAALDALTRRKMQEELLALWDEVRFTLLFVTHSIEEALVVG 221 A+ARA QPK LL+DEPF ALDALTR +Q+ L L + T++ VTH ++EAL + Sbjct: 138 AALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLA 197 Query: 222 NRILLLSPHPGRVRAEIN----SHQYDLSSLGGV 251 +RI + SP P +V E N +DLS + Sbjct: 198 DRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAI 231 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 791,624 Number of extensions: 31145 Number of successful extensions: 441 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 127 Length of query: 290 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 206 Effective length of database: 1,222,130 Effective search space: 251758780 Effective search space used: 251758780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)