BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0037.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...   387   e-109
gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...    88   4e-19
gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...    80   1e-16

>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  387 bits (994), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MEYAYKRMASPAGVLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRAVLIETEHQLRE 60
           MEYAYKRMASPAGVLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRAVLIETEHQLRE
Sbjct: 1   MEYAYKRMASPAGVLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRAVLIETEHQLRE 60

Query: 61  YFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANG 120
           YFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANG
Sbjct: 61  YFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANG 120

Query: 121 RNPICIIAPCHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR 180
           RNPICIIAPCHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR
Sbjct: 121 RNPICIIAPCHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR 180

Query: 181 REDPNQLSLL 190
           REDPNQLSLL
Sbjct: 181 REDPNQLSLL 190


>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score = 88.2 bits (217), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 13  GVLKLVAKGDHLAAI-LWEDDDALRVRLGEMVEDEDRAV----LIETEHQLREYFAGERE 67
           G L + A G  + A+ L ED D L  +L +     D A        T  Q+       R+
Sbjct: 213 GALLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQ 272

Query: 68  SFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANGRNPICII 127
              LPL   GT FQ++VW AL  IP G T TY ++A +LG   AVRAV  A   N I ++
Sbjct: 273 GAALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAVL 332

Query: 128 APCHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEG 163
            PCHR++   G  +G+  G+  K  LLA E  + EG
Sbjct: 333 IPCHRIVRLDGSPSGYRWGIQRKAALLAREAANREG 368


>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 79.7 bits (195), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 10/124 (8%)

Query: 44  EDEDRAVLIETEHQLREYFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIA 103
           +D   AV  +   Q+  Y A     FDLP    G+ FQ++VW A++ IP GQ  TY  +A
Sbjct: 56  KDATDAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVA 115

Query: 104 RQLGNEKAVRAVGAANGRNPICIIAPCHRVIGAGGELTGFA-----GGLH--VKKLLLAI 156
           +++  + A RAVG A G N   ++ PCHRV  AGG L GF+      G H  VK+ LL  
Sbjct: 116 KRI--QSAPRAVGQACGANWYPLVIPCHRVTAAGG-LGGFSHHDAEDGFHLEVKRWLLRH 172

Query: 157 EGIS 160
           EG++
Sbjct: 173 EGVA 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 553,684
Number of extensions: 20908
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)