BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0031.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311021|ref|YP_003775113.1| hypothetical protein Hsero_1692...    66   1e-12

>gi|300311021|ref|YP_003775113.1| hypothetical protein Hsero_1692
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score = 65.9 bits (159), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 61  ELEAAIMRIFDESFGPR-TDTLERQMSMSLIADIGPVAFVQKVLWGEEISDIALTIALER 119
           +L+ A+ RI  E +GP  T ++E +++M ++  +G   FV+K+LWGEE  D+ L  A+ +
Sbjct: 78  DLDKAVERILREGYGPEETGSIELELAMPVLRAVGAEVFVKKLLWGEEEDDLTLACAMAK 137

Query: 120 MLPALERLVEQYPRAFLQQANSLL---RRFK 147
           ++P  E LV+++P   L QA   L   R F+
Sbjct: 138 VIPQFECLVQEHPFLLLSQAADCLDAIRNFR 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 360,237
Number of extensions: 10871
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)