BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0024.p
         (711 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309387|ref|YP_003773479.1| membrane protein [Herbaspirillu...  1384   0.0  

>gi|300309387|ref|YP_003773479.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 711

 Score = 1384 bits (3581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/711 (99%), Positives = 707/711 (99%)

Query: 1   MPPLLTPRFSQYFSLYRLLLLSHCRRCRTRVERWRAQFPLRHANLSEGLRAACSAAAMLL 60
           MPPLLTPRFSQYFSLYRLLLLSHCRRCRTRVERWRAQFPLRHANLSEGLRAACSAAAMLL
Sbjct: 1   MPPLLTPRFSQYFSLYRLLLLSHCRRCRTRVERWRAQFPLRHANLSEGLRAACSAAAMLL 60

Query: 61  LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAASAASLSVEL 120
           LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAASAASLSVEL
Sbjct: 61  LGEWLGNPLFSWAAIGAFLTCLADSAGSNRARLASMGGFALASTLGGMVAASAASLSVEL 120

Query: 121 GWLTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPVILWPFSQSHVLIYFGGCLW 180
           GWLTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPVILWP SQSHVLIYFGGCLW
Sbjct: 121 GWLTIMACAGVAGFSRIYGAAAGLVLMLAAGVSAIMADAPVILWPLSQSHVLIYFGGCLW 180

Query: 181 ALLLGLTVWRIHPFGPARQAVARAYGTLAELASIAAANGLDDPAYAMHAADLAAHARRHA 240
           ALLLGLTVWRIHPFGPARQAVARAYGTLAELASIAAANGLDDPAYAMHAADLAAHARRHA
Sbjct: 181 ALLLGLTVWRIHPFGPARQAVARAYGTLAELASIAAANGLDDPAYAMHAADLAAHARRHA 240

Query: 241 RFDIAAARRALQAVAVERTESRRLYDNLLVRLARADDLLDGVTLLVDLQLTHYQEPRARQ 300
           RFDIAAARRALQAVAVERTESRRLYDNLLVRLARADDLLDGVTLLVDLQLTHYQEPRARQ
Sbjct: 241 RFDIAAARRALQAVAVERTESRRLYDNLLVRLARADDLLDGVTLLVDLQLTHYQEPRARQ 300

Query: 301 RTTRVLAGIARQLQAMQAAMSQGEAIAADEDARIMARLRQLVARLPSGTGRLLQQVHTPL 360
           RTTRVLAGIARQLQAMQAAMSQGEAIAADEDARIMARLRQLVARLPSGTGRLLQQVHTPL
Sbjct: 301 RTTRVLAGIARQLQAMQAAMSQGEAIAADEDARIMARLRQLVARLPSGTGRLLQQVHTPL 360

Query: 361 AVGSDDPAGLKQMARSAAPAPALPAILLHRVRAWWRKAASHAATGSAEWHHAWRCAAAAG 420
           AVGSDDPAGLK MARSAAPAPALPAILLHRVRAWWRKAASHAATGSAEWHHAWRCAAAAG
Sbjct: 361 AVGSDDPAGLKLMARSAAPAPALPAILLHRVRAWWRKAASHAATGSAEWHHAWRCAAAAG 420

Query: 421 ATYLIVHLLELPFGYWATMATMLVMQPSIAESWSRSMERAVGSVVGGVLAVALCLVVHSP 480
           ATYLIVHLLELPFGYWATMATMLVMQPSIAESWSRSMERAVGSVVGGVLAV LCLVVHSP
Sbjct: 421 ATYLIVHLLELPFGYWATMATMLVMQPSIAESWSRSMERAVGSVVGGVLAVVLCLVVHSP 480

Query: 481 LALALLVFPLTVLTMALKPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIG 540
           LALALLVFPLTVLTMALKPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIG
Sbjct: 481 LALALLVFPLTVLTMALKPVSYGLYATFLTPVFVLVADVGGDPAHELANAALRAGNNVIG 540

Query: 541 AVVAVLASYLFWPRRHPEDPQAQLQRMAQLNLAYLIEALATPAAPPMATLHAHRRAACVA 600
           AVVAVLASYLFWPRRHPEDPQAQLQRMAQLNLAYLIEALATPAAPPMATLHAHRRAACVA
Sbjct: 541 AVVAVLASYLFWPRRHPEDPQAQLQRMAQLNLAYLIEALATPAAPPMATLHAHRRAACVA 600

Query: 601 NVEAGLLLQRVARERGWPERDHGRGRTAVALSRRLAAAASHIWAHPQAASPELLGWLRAL 660
           NVEAGLLLQRVARERGWPERDHGRGRTAVALSRRLAAAASHIWAHPQAASPELLGWLRAL
Sbjct: 601 NVEAGLLLQRVARERGWPERDHGRGRTAVALSRRLAAAASHIWAHPQAASPELLGWLRAL 660

Query: 661 AAALSAHQSRALHDLLRHRPAPMHLAQAAAVETACLLVATLDTDTAMPAGK 711
           AAALSAHQSRALHDLLRHRPAPMHLAQAAAVETACLLVATLD DTAMPAGK
Sbjct: 661 AAALSAHQSRALHDLLRHRPAPMHLAQAAAVETACLLVATLDADTAMPAGK 711


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,617,979
Number of extensions: 52718
Number of successful extensions: 394
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 619
Effective length of database: 1,184,250
Effective search space: 733050750
Effective search space used: 733050750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)