BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0020.p (331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309384|ref|YP_003773476.1| transcription regulator protein... 616 e-177 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 166 3e-42 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 155 3e-39 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 139 2e-34 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 137 1e-33 >gi|300309384|ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 616 bits (1588), Expect = e-177, Method: Compositional matrix adjust. Identities = 302/302 (100%), Positives = 302/302 (100%) Query: 30 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 89 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY Sbjct: 1 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60 Query: 90 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 149 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL Sbjct: 61 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120 Query: 150 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 209 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE Sbjct: 121 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 180 Query: 210 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 269 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN Sbjct: 181 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 240 Query: 270 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGAS 329 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGAS Sbjct: 241 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGAS 300 Query: 330 PS 331 PS Sbjct: 301 PS 302 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 156/294 (53%), Gaps = 7/294 (2%) Query: 25 DRIELMQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 84 D+++ MQTFV +VE+GS AA ++P +SR++ LE+ LG+RLL R+T + +T++ Sbjct: 2 DKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDE 61 Query: 85 GERCYERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRI 144 G + R KELL D E+E+ A G LR+ P FG +QL +F QHP I Sbjct: 62 GRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPLI 121 Query: 145 TVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHP 204 T+ L DR D + +G D AI++ + D +VA LA V + AP LA P P Sbjct: 122 TLNITLSDRTIDLLEEGFDMAIRISALGDSRMVARPLAPVRMIACAAPEFLARHGTPGTP 181 Query: 205 ADLAELPWIAIPAFYR---REVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVA 261 A+L + P+I+ YR + + H H G+ QV R + ++ R A+AG G+A Sbjct: 182 AELRDYPFISYS--YRAGGDDWSFRHVH-GDTCQVRVRSTVYVNNGATCRAMAIAGQGIA 238 Query: 262 VGSSWVLNEDVAAGRLVQLLPDWQPAP-LPVCLLYPYARFQPARLRHFIDTMKE 314 + +++N + AG+LV+L W L V LYP P +++ D + E Sbjct: 239 IQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIE 292 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 155 bits (393), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 153/309 (49%), Gaps = 2/309 (0%) Query: 25 DRIELMQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 84 DR + MQ F +V+A S + AA L + T++ +Q LE L VRLL R+T + +T D Sbjct: 2 DRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTPD 61 Query: 85 GERCYERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRI 144 G YER +LA D+ E R + +G LR+ VP + G+ L+ L F ++P I Sbjct: 62 GAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPDI 121 Query: 145 TVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHP 204 + + DR D + + +DC I++GE+ D S+VA + +T AP+ L +P Sbjct: 122 ELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHTI 181 Query: 205 ADLAELPWI-AIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVG 263 DL + + + R + G R+V +L + A A+ G G+ Sbjct: 182 EDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQA 241 Query: 264 SSWVLNEDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAV-VHQ 322 +++ + GRLV++L W+PAP+P+ ++Y + R ++R F+D + E +H+ Sbjct: 242 PLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPLHK 301 Query: 323 AVGWGASPS 331 A G S Sbjct: 302 ACTMGMEES 310 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 151/293 (51%), Gaps = 5/293 (1%) Query: 25 DRIELMQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 84 D+ + + TF + GSLSAAA I RRL LE LGV+LLQR+T + +T + Sbjct: 2 DQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNE 61 Query: 85 GERCYERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRI 144 G E + +LA +D E+ + A G L + P FG++ + L F+ +H + Sbjct: 62 GAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDV 121 Query: 145 TVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHP 204 T+ L+DR AD I +GID AI++ + D ++V++ LAE R+ V AP+ L P+ P Sbjct: 122 TLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSP 181 Query: 205 ADLAELPWIAIPA-FYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVG 263 +L +A+ + +R TL +G+ +V + L N A+AG G+A Sbjct: 182 DELMRHNCLAMSSEGSQRGWTLR--QSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWR 239 Query: 264 SSWVLNEDVAAGRLVQLLPDW-QPAPLPVCLLYPYARFQPARLRHFIDTMKEA 315 S W + + AG LV +L + PAP + ++ R P R+R F+D ++ A Sbjct: 240 SMWEVGAAIEAGELVTVLDKFAAPAP-SIYAVFAQRRHLPLRIRAFVDFLRHA 291 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/295 (30%), Positives = 152/295 (51%), Gaps = 17/295 (5%) Query: 26 RIELMQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDG 85 +++ ++ F R+ E S S AA QL ++S +Q LE+ LG RLLQR+T +++T DG Sbjct: 3 QLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTADG 62 Query: 86 ERCYERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRIT 145 E Y R++ELL ++ Q G LRV + A ++ ++ L F+ +HP++ Sbjct: 63 EAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQLE 122 Query: 146 VEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPA 205 +E DR D +++G DC ++ G ++D S+VA + + ++ +P L P+ Sbjct: 123 IELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQTLE 182 Query: 206 DLAELPWIAIPAFYRREVTLTHA-----HTGEQ-RQVSFRPQLVTDSLYALRNTAVAGLG 259 DLA+ + + R+V + G+Q R + + +S +AGLG Sbjct: 183 DLAQHRLV-----HYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNSTETYYAACLAGLG 237 Query: 260 VA----VGSSWVLNEDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFID 310 + VG+ + + G +V++LP ++PAP+PV LLY R PARL F+D Sbjct: 238 LIQLPLVGAQK--RQMLDGGHVVEVLPQYRPAPMPVSLLYASRRHVPARLAGFMD 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,009,831 Number of extensions: 44577 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 61 Length of query: 331 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 245 Effective length of database: 1,212,660 Effective search space: 297101700 Effective search space used: 297101700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)